RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 IGLV1-47P01700 117 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 HIST1H1DP16402 221 aaKnown RBP16.47■□□□□ 0.23
PTCD3-220ENST00000627371 UBA52P62987 128 aaKnown RBP16.47■□□□□ 0.23
PTCD3-220ENST00000627371 SLC9A3R2Q15599 337 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 TMEM30BQ3MIR4 351 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 UTF1Q5T230 341 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 MINOS1Q5TGZ0 78 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 OLFML2AQ68BL7 652 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 ZNF880Q6PDB4 577 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 Q6ZPA2 131 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 MOB1BQ7L9L4 216 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 LHFPL4Q7Z7J7 247 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 TMEM86BQ8N661 226 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 OR52M1Q8NGK5 317 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 OR4P4Q8NGL7 312 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 UBALD1Q8TB05 177 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 ZFAND2BQ8WV99 257 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 SLC25A38Q96DW6 304 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 CMSS1Q9BQ75 279 aaKnown RBP16.47■□□□□ 0.23
PTCD3-220ENST00000627371 HDHD3Q9BSH5 251 aaPredicted RBP16.47■□□□□ 0.23
PTCD3-220ENST00000627371 TAF9BQ9HBM6 251 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 C12orf4Q9NQ89 552 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 KCNIP1Q9NZI2 227 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 MINOS1-NBL1R4GNA1 71 aa16.47■□□□□ 0.23
PTCD3-220ENST00000627371 FBN1P35555 2871 aaKnown RBP16.46■□□□□ 0.23
PTCD3-220ENST00000627371 POM121CA8CG34 1229 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 HBZP02008 142 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 LDLRAD2Q5SZI1 272 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 CLVS1Q8IUQ0 354 aaPredicted RBP16.46■□□□□ 0.23
PTCD3-220ENST00000627371 OR9G1Q8NH87 305 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 SSMEM1Q8WWF3 244 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 MALSU1Q96EH3 234 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 DUX5Q96PT3 197 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 MEGF9Q9H1U4 602 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 GFOD1Q9NXC2 390 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 POMT1Q9Y6A1 747 aa16.46■□□□□ 0.23
PTCD3-220ENST00000627371 SERPINE3A8MV23 424 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 SDCBPO00560 298 aaPredicted RBP16.45■□□□□ 0.22
PTCD3-220ENST00000627371 TOR1AO14656 332 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 GNB3P16520 340 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 HTR1DP28221 377 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 IER3P46695 156 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 PRRX1P54821 245 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 LOXL3P58215 753 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 ARL6IP1Q15041 203 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 HMGN3Q15651 99 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 HLA-DRB5Q30154 266 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 KRTAP24-1Q3LI83 254 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 PRR18Q8N4B5 295 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 OR1L1Q8NH94 360 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 NDNFQ8TB73 568 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 KCTD12Q96CX2 325 aaKnown RBP16.45■□□□□ 0.22
PTCD3-220ENST00000627371 DCSTAMPQ9H295 470 aa16.45■□□□□ 0.22
PTCD3-220ENST00000627371 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTCD3-220ENST00000627371 A0A075B6Q4 140 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 J3QR06 171 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 RNASE1P07998 156 aaKnown RBP16.44■□□□□ 0.22
PTCD3-220ENST00000627371 CD3GP09693 182 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 Q3ZCU0 254 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 SETD6Q8TBK2 473 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 RAB2BQ8WUD1 216 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 TMEM158Q8WZ71 300 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 LEAP2Q969E1 77 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 CREB3L1Q96BA8 519 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 BCL7BQ9BQE9 202 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 MMP28Q9H239 520 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 DPAGT1Q9H3H5 408 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 MGAT4AQ9UM21 535 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 PSG11Q9UQ72 335 aa16.44■□□□□ 0.22
PTCD3-220ENST00000627371 A0A0A6YYH2 397 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 IGHV3-43A0A0B4J1X8 118 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 A6NJ64 397 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 IGHV3-7P01780 117 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 IGHV4-59P01825 116 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 IGHV3-43DP0DP04 118 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 GNG10P50151 68 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 RORCP51449 518 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 TMBIM6P55061 237 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 MRPS15P82914 257 aaKnown RBP16.43■□□□□ 0.22
PTCD3-220ENST00000627371 SSX2Q16385 188 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 AANATQ16613 207 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 DYNAPQ8N1N2 210 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 FAM216AQ8WUB2 273 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 Q9N2K0 584 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 DPM3Q9P2X0 92 aa16.43■□□□□ 0.22
PTCD3-220ENST00000627371 BUB1B-PAK6H3BSN5 160 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 PAX6P26367 422 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 HLA-DRB3P79483 266 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 HTD2P86397 168 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 LRRC75BQ2VPJ9 315 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 UBE2NLQ5JXB2 153 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 C5orf24Q7Z6I8 188 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 C8orf31Q8N9H6 132 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 PHF21AQ96BD5 680 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 GALMQ96C23 342 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 SSX3Q99909 188 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 ABCG5Q9H222 651 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 GNG12Q9UBI6 72 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 JPT1Q9UK76 154 aa16.42■□□□□ 0.22
PTCD3-220ENST00000627371 AMMECR1Q9Y4X0 333 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms