RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 MMP26Q9NRE1 261 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 LOC105371242A0A075B767 164 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 SPCS3P61009 180 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 KHDC3LQ587J8 217 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 ZNF826PQ6ZT77 177 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 TMEM105Q8N8V8 129 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 SLIRPQ9GZT3 109 aaKnown RBP9.88□□□□□ -0.83
CLIP1-219ENST00000620786 HIGD1AQ9Y241 93 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 KLHDC2Q9Y2U9 406 aa9.88□□□□□ -0.83
CLIP1-219ENST00000620786 ZNF883P0CG24 379 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 HDHD3Q9BSH5 251 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-219ENST00000620786 WSB1Q9Y6I7 421 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 ARFGEF1Q9Y6D6 1849 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 PPIAL4CA0A0B4J2A2 164 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 NPIPB8E9PQR5 432 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 PPIAL4GP0DN37 164 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 TMEM97Q5BJF2 176 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 MANBALQ9NQG1 85 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 COL11A1P12107 1806 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-219ENST00000620786 LEUTXA8MZ59 168 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 CRXO43186 299 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-219ENST00000620786 CTSBP07858 339 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 VSIG8P0DPA2 414 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 NPY1RP25929 384 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 FOXB2Q5VYV0 432 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 OR8G5Q8NG78 346 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 ADIPOR1Q96A54 375 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 PGLYRP3Q96LB9 341 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 GUCD1Q96NT3 240 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 ZNF426Q9BUY5 554 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 NDUFA2O43678 99 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 SCO1O75880 301 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 TIAF1O95411 115 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 HBZP02008 142 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 TTRP02766 147 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 PF4P02776 101 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 ANKRD55Q3KP44 614 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 ZNF680Q8NEM1 530 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 MARS2Q96GW9 593 aaKnown RBP9.87□□□□□ -0.83
CLIP1-219ENST00000620786 RAXQ9Y2V3 346 aa9.87□□□□□ -0.83
CLIP1-219ENST00000620786 TRAV8-7A0A075B6U6 113 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 KIAA1324LA8MWY0 1029 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 OR2H2O95918 312 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 CEBPDP49716 269 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 CAMPP49913 170 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 ROM1Q03395 351 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 RRN3P1Q2M238 152 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 UNQ5815/PRO19632Q6UWF5 114 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 SLC2A9Q9NRM0 540 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 IGHV1-69-2A0A0G2JMI3 117 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 A0A0U1RQV5 110 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 PTP4A3O75365 173 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 OR5AL1P0C617 328 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 SCGB1C2P0DMR2 95 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 G0S2P27469 103 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 MMP16P51512 607 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 NHLH1Q02575 133 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 NHLH2Q02577 135 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 FOXD3Q9UJU5 478 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 MBPP02686 304 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 FABP4P15090 132 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 WNT5AP41221 380 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 IZUMO4Q1ZYL8 232 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 SNX22Q96L94 193 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 Q9N2K0 584 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 WASHC3Q9Y3C0 194 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 HPRT1P00492 218 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 P01737 135 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 HOXB1P14653 301 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 RPL27AP46776 148 aaKnown RBP9.86□□□□□ -0.83
CLIP1-219ENST00000620786 C19orf35Q6ZS72 473 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 PPP1R32Q7Z5V6 425 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 MUC15Q8N387 334 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 SCNM1Q9BWG6 230 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 NRXN2Q9P2S2 1712 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 IGHV3OR16-12A0A075B7B8 117 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 TMEM229AB2RXF0 380 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 GDF9O60383 454 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 HPXP02790 462 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 RNF224P0DH78 156 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 TMEM33P57088 247 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 SIRT7Q9NRC8 400 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 IDI2-AS1Q9NZ38 188 aa9.86□□□□□ -0.83
CLIP1-219ENST00000620786 NKX2-6A6NCS4 301 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 CTDSPLO15194 276 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 MC5RP33032 325 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 TMEM50BP56557 158 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 PCSK4Q6UW60 755 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 ABHD17AQ96GS6 310 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 PITPNC1Q9UKF7 332 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 ATG2BQ96BY7 2078 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 TEX50A0A1B0GTY4 177 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 A0A1W2PNV4 684 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 IGSF23A1L1A6 192 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 CD40P25942 277 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 ARF6P62330 175 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 FDX2Q6P4F2 183 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 OR1L6Q8NGR2 347 aa9.85□□□□□ -0.83
CLIP1-219ENST00000620786 MRPL24Q96A35 216 aaKnown RBP9.85□□□□□ -0.83
CLIP1-219ENST00000620786 METTL26Q96S19 204 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms