RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SIGLEC12Q96PQ1 595 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 DIRC2Q96SL1 478 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 DUSP23Q9BVJ7 150 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 OR2J1Q9GZK6 312 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 RBKSQ9H477 322 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 TDRD6O60522 2096 aaKnown RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 ANKUB1A6NFN9 424 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 LIPT2A6NK58 231 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 SIAH2O43255 324 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 CHST1O43916 411 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 TMEM50AO95807 157 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 FAHP16930 419 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 AADACP22760 399 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 UCP1P25874 307 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 MDH2P40926 338 aaKnown RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 SUMO3P55854 103 aaPredicted RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 OR5I1Q13606 314 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 NMSQ5H8A3 153 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 FBXW9Q5XUX1 488 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 Q6ZSR3 168 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 SLC37A2Q8TED4 501 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 PIGTQ969N2 578 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 LIN37Q96GY3 246 aaPredicted RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 RAB40CQ96S21 281 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 COPS7AQ9UBW8 275 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 DMXL1Q9Y485 3027 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 PHF3Q92576 2039 aaKnown RBP9.31□□□□□ -0.92
UPF3A-212ENST00000619079 VSTM2BA6NLU5 285 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF737O75373 536 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 VENTXO95231 258 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF883P0CG24 379 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 TMEM41BQ5BJD5 291 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 TEX43Q6ZNM6 134 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 TBC1D26Q86UD7 250 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ADPRHL1Q8NDY3 354 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 LYZL4Q96KX0 146 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 WWTR1Q9GZV5 400 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 GPR35Q9HC97 309 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF160Q9HCG1 818 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 LANCL2Q9NS86 450 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 PIGLQ9Y2B2 252 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ITGB1BP1O14713 200 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF205O95201 554 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 JMJD7P0C870 316 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 PSMB3P49720 205 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 PAFAH1B2P68402 229 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 ENDOGQ14249 297 aaKnown RBP9.31□□□□□ -0.92
UPF3A-212ENST00000619079 SLC25A47Q6Q0C1 308 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 NUFIP2Q7Z417 695 aaKnown RBP9.31□□□□□ -0.92
UPF3A-212ENST00000619079 SFTPA2Q8IWL1 248 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 METTL27Q8N6F8 245 aaPredicted RBP9.31□□□□□ -0.92
UPF3A-212ENST00000619079 AGBL5Q8NDL9 886 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 RIMS4Q9H426 269 aaPredicted RBP9.31□□□□□ -0.92
UPF3A-212ENST00000619079 TMEM106BQ9NUM4 274 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 RNF115Q9Y4L5 304 aa9.31□□□□□ -0.92
UPF3A-212ENST00000619079 PCDH15Q96QU1 1955 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 GVINP1Q7Z2Y8 2422 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 LRRC3CA6NJW4 275 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 CDAP32320 146 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 FGF8P55075 233 aaPredicted RBP9.3□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF726P1Q15940 193 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 DMRTC1Q5HYR2 192 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 TMEM211Q6ICI0 200 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 TOMM20LQ6UXN7 152 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 SSX7Q7RTT5 188 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 C22orf15Q8WYQ4 148 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 B3GAT1Q9P2W7 334 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 IGKV3D-11A0A0A0MRZ8 115 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 SLC25A6P12236 298 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 MYF5P13349 255 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 CD99P14209 185 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 TPPP2P59282 170 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 HBG1P69891 147 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 HBG2P69892 147 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 CNN3Q15417 329 aaKnown RBP9.3□□□□□ -0.92
UPF3A-212ENST00000619079 SPIN3Q5JUX0 258 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 POC1BQ8TC44 478 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 RPUSD4Q96CM3 377 aaKnown RBP9.3□□□□□ -0.92
UPF3A-212ENST00000619079 SDSLQ96GA7 329 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 NUDT22Q9BRQ3 303 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 RSG1Q9BU20 258 aa9.3□□□□□ -0.92
UPF3A-212ENST00000619079 PARD6GQ9BYG4 376 aaPredicted RBP9.3□□□□□ -0.92
UPF3A-212ENST00000619079 TCF21O43680 179 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 CNOT4O95628 575 aaKnown RBP9.29□□□□□ -0.92
UPF3A-212ENST00000619079 CD59P13987 128 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 TCN2P20062 427 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 GNRHRP30968 328 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 GUCA1AP43080 201 aaPredicted RBP9.29□□□□□ -0.92
UPF3A-212ENST00000619079 PAX9P55771 341 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 HHEXQ03014 270 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 C17orf67Q0P5P2 114 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 OR5D13Q8NGL4 314 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 CMTM2Q8TAZ6 248 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 PLPPR1Q8TBJ4 325 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 MRPL30Q8TCC3 161 aaKnown RBP9.29□□□□□ -0.92
UPF3A-212ENST00000619079 LHX4Q969G2 390 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 VAMP8Q9BV40 100 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 ELOVL1Q9BW60 279 aa9.29□□□□□ -0.92
UPF3A-212ENST00000619079 REPIN1Q9BWE0 567 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms