RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TAF9BQ9HBM6 251 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 IDI2-AS1Q9NZ38 188 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 FAM96BQ9Y3D0 163 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 NOTCH1P46531 2555 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 H3BUX3 64 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 RBP4P02753 201 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 KCNJ3P48549 501 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 HIST2H2BDQ6DRA6 164 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 CCBE1Q6UXH8 406 aaPredicted RBP10.89□□□□□ -0.67
LINC00540-202ENST00000616974 RBMS3Q6XE24 437 aaKnown RBP10.89□□□□□ -0.67
LINC00540-202ENST00000616974 Q6ZTK2 550 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 TPRA1Q86W33 373 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 CLEC7AQ9BXN2 247 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 SPACA1Q9HBV2 294 aa10.89□□□□□ -0.67
LINC00540-202ENST00000616974 MBNL3Q9NUK0 354 aaKnown RBP10.89□□□□□ -0.67
LINC00540-202ENST00000616974 IGKV1D-8A0A087WSZ0 117 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 SERPINB10P48595 397 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 KRTAP21-3Q3LHN1 58 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 TMEM219Q86XT9 240 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 TEX29Q8N6K0 151 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 OR13D1Q8NGV5 346 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 SETD6Q8TBK2 473 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 GCDHQ92947 438 aaPredicted RBP10.88□□□□□ -0.67
LINC00540-202ENST00000616974 SSX3Q99909 188 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 URM1Q9BTM9 101 aaKnown RBP10.88□□□□□ -0.67
LINC00540-202ENST00000616974 ATG5Q9H1Y0 275 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 RAB22AQ9UL26 194 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 FUOMA2VDF0 154 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 CHST1O43916 411 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 FCER2P06734 321 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 FBP1P09467 338 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 PPP1CCP36873 323 aaKnown RBP10.88□□□□□ -0.67
LINC00540-202ENST00000616974 REG1BP48304 166 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 PSMD7P51665 324 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 SPCS2Q15005 226 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 MIDNQ504T8 468 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 OR10R2Q8NGX6 335 aa10.88□□□□□ -0.67
LINC00540-202ENST00000616974 A0A087X0M5 115 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 IGKV1-6A0A0C4DH72 117 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 A0A1B0GX30 115 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 hCG_1809904A0A1W2PP81 198 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 A0A1W2PPE2 198 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 A0A1W2PR64 198 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 A0A1W2PRV1 198 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 MFNGO00587 321 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 GABARAPO95166 117 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 SCTP09683 121 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 FAM189A2Q15884 450 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 HLA-DRB5Q30154 266 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 LDLRAD3Q86YD5 345 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 BEND2Q8NDZ0 799 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 RAB3CQ96E17 227 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 TNCP24821 2201 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 NOTCH3Q9UM47 2321 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 TMEM235A6NFC5 223 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 SDCBPO00560 298 aaPredicted RBP10.87□□□□□ -0.67
LINC00540-202ENST00000616974 RNASE1P07998 156 aaKnown RBP10.87□□□□□ -0.67
LINC00540-202ENST00000616974 LGALS4P56470 323 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 HERPUD1Q15011 391 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 ZNF880Q6PDB4 577 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 GDPGP1Q6ZNW5 385 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 ANKRD13BQ86YJ7 626 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 OR56B1Q8NGI3 324 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 NUDCD2Q8WVJ2 157 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 IL1F10Q8WWZ1 152 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 NCOR1P1Q9H4R4 102 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 RHBDL2Q9NX52 303 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 OR1A1Q9P1Q5 309 aa10.87□□□□□ -0.67
LINC00540-202ENST00000616974 LY6LH3BQJ8 138 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 BUB1B-PAK6H3BSN5 160 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 J3QR06 171 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 F2RL2O00254 374 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 CD34P28906 385 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 BPIFB3P59826 476 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 CLVS1Q8IUQ0 354 aaPredicted RBP10.86□□□□□ -0.67
LINC00540-202ENST00000616974 ZNF439Q8NDP4 499 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 SSMEM1Q8WWF3 244 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 SLC25A46Q96AG3 418 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 GFOD1Q9NXC2 390 aa10.86□□□□□ -0.67
LINC00540-202ENST00000616974 GPR137BO60478 399 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 HIST1H1DP16402 221 aaKnown RBP10.85□□□□□ -0.67
LINC00540-202ENST00000616974 GZMHP20718 246 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 SRSF4Q08170 494 aaKnown RBP10.85□□□□□ -0.67
LINC00540-202ENST00000616974 SCGB2A2Q13296 93 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 TIMM50Q3ZCQ8 353 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 CT45A1Q5HYN5 189 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 C16orf87Q6PH81 154 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 Q6ZS46 218 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 GPR141Q7Z602 305 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 CT45A3Q8NHU0 189 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 MEGF9Q9H1U4 602 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 MMP28Q9H239 520 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 CHMP1AQ9HD42 196 aaPredicted RBP10.85□□□□□ -0.67
LINC00540-202ENST00000616974 HSF4Q9ULV5 492 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 A0A0A6YYJ9 748 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 ZNF736B4DX44 427 aaPredicted RBP10.85□□□□□ -0.67
LINC00540-202ENST00000616974 ORC5O43913 435 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 SSX5O60225 188 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 RAB6AP20340 208 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 HMGN3Q15651 99 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms