RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MRGPRGQ86SM5 289 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 NPDC1Q9NQX5 325 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ONECUT1Q9UBC0 465 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ATAD5Q96QE3 1844 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 MS4A18H0YCH9 400 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 PGA4P0DJD7 388 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 AESQ08117 197 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 MS4A18Q3C1V0 323 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 SLC35E3Q7Z769 313 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 PUSL1Q8N0Z8 303 aaKnown RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM252Q8N6L7 170 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 OR10G8Q8NGN5 311 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 IER2Q9BTL4 223 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 RNF122Q9H9V4 155 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF71Q9NQZ8 489 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 GLRX2Q9NS18 164 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 LHFPL6Q9Y693 200 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ISG15P05161 165 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 G0S2P27469 103 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 OR10A7Q8NGE5 316 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 SEBOXQ9HB31 216 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 AURKAIP1Q9NWT8 199 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 SEMA7AO75326 666 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 S100A4P26447 101 aaKnown RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 P2RY4P51582 365 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM255AQ5JRV8 349 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 MDP1Q86V88 176 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 TPRX1Q8N7U7 411 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ABHD14AQ9BUJ0 271 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF785A8K8V0 405 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 CRISP2P16562 243 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 OR4F17Q8NGA8 305 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 OR4P4Q8NGL7 312 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 HES7Q9BYE0 225 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 MANBALQ9NQG1 85 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 PSG5Q15238 335 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 ETFRF1Q6IPR1 90 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 VPS25Q9BRG1 176 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 MYO16Q9Y6X6 1858 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 FAM157AC9JC47 383 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 PPP1CCP36873 323 aaKnown RBP12.18□□□□□ -0.46
CPSF1-212ENST00000616140 KIR2DS2P43631 304 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 VSTM2AQ8TAG5 236 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 MRPL30Q8TCC3 161 aaKnown RBP12.18□□□□□ -0.46
CPSF1-212ENST00000616140 SRD5A3Q9H8P0 318 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 MIOXQ9UGB7 285 aa12.18□□□□□ -0.46
CPSF1-212ENST00000616140 PPIHO43447 177 aaKnown RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF253O75346 499 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 IFI6P09912 130 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 SULT1A2P50226 295 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF273Q14593 569 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 Q56UQ5 140 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 TGIF2LXQ8IUE1 241 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF98A6NK75 572 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 FAM90A27PA6NNH2 459 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 SPCS3P61009 180 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 EGR4Q05215 589 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 CEBPEQ15744 281 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 TEX30Q5JUR7 227 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 SLC25A47Q6Q0C1 308 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 MS4A3Q96HJ5 214 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 CDX2Q99626 313 aaPredicted RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 WDR61Q9GZS3 305 aaKnown RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 PKDREJQ9NTG1 2253 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 B4DEV8 164 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 GAPDHP04406 335 aaKnown RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 B2MP61769 119 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 SLC23A3Q6PIS1 610 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 CACNA1BQ00975 2339 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 LRRC3CA6NJW4 275 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 FAM74A7A6NL05 159 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 KLF4O43474 513 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 PTTG1IPP53801 180 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 FAM74A3Q4VXF1 159 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 ADAMTS17Q8TE56 1095 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM167BQ9NRX6 74 aa12.17□□□□□ -0.46
CPSF1-212ENST00000616140 TECRQ9NZ01 308 aaKnown RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 YTHDF2Q9Y5A9 579 aaKnown RBP12.17□□□□□ -0.46
CPSF1-212ENST00000616140 TRAV38-1A0A0B4J264 116 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 A0A1W2PRD5 423 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 A0A1W2PRF3 423 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 A0A1W2PRM7 423 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 OR2J3O76001 311 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 SCTP09683 121 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 CYB561D1Q8N8Q1 229 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 GPHA2Q96T91 129 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 CLN8Q9UBY8 286 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 SP1P08047 785 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 OVCH2Q7RTZ1 564 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 FAM181AQ8N9Y4 354 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 WNT2BQ93097 391 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 OR10C1Q96KK4 312 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 FUT9Q9Y231 359 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 HS3ST3B1Q9Y662 390 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 COL6A6A6NMZ7 2263 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 CTXND1A0A1B0GTU2 59 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 SMIM6P0DI80 62 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 HTR1DP28221 377 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 TNXAQ16473 311 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 BHLHA15Q7RTS1 189 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms