RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SNIP1Q8TAD8 396 aaKnown RBP15.71■□□□□ 0.11
UPF1-210ENST00000600689 SGCZQ96LD1 299 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 DKKL1Q9UK85 242 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 PITPNC1Q9UKF7 332 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 A0A0J9YW62 118 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 PATE3B3GLJ2 98 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 RPL36A-HNRNPH2H7BZ11 118 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 OR4A8P0C604 315 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 VDAC1P21796 283 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 EXT1Q16394 746 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 Q6ZRM9 215 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 GPR146Q96CH1 333 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 RCC1LQ96I51 464 aaKnown RBP15.71■□□□□ 0.11
UPF1-210ENST00000600689 SRXN1Q9BYN0 137 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 SDF2L1Q9HCN8 221 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 CRIM1Q9NZV1 1036 aa15.71■□□□□ 0.11
UPF1-210ENST00000600689 NR2C1P13056 603 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 GZMHP20718 246 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 GPM6AP51674 278 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 NCR3LG1Q68D85 454 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 WDR5BQ86VZ2 330 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 PLPPR1Q8TBJ4 325 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 CACNG5Q9UF02 275 aa15.71■□□□□ 0.1
UPF1-210ENST00000600689 TMEM265A0A087WTH1 108 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 CFIP05156 583 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 CD33P20138 364 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 ID3Q02535 119 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 OR1P1Q8NH06 330 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 SLC25A22Q9H936 323 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 PPP1R3CQ9UQK1 317 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 DOCK11Q5JSL3 2073 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 EGR1P18146 543 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 OTX1P32242 354 aaPredicted RBP15.7■□□□□ 0.1
UPF1-210ENST00000600689 OR13D1Q8NGV5 346 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 LHX4Q969G2 390 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 DDA1Q9BW61 102 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 ZDBF2Q9HCK1 2354 aa15.7■□□□□ 0.1
UPF1-210ENST00000600689 UBE2L5PA0A1B0GUS4 154 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 A8MWP6 167 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 H3F3AP84243 136 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 PSG4Q00888 419 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 NMSQ5H8A3 153 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 TMEM183AQ8IXX5 376 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 ZIC4Q8N9L1 334 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 DUSP23Q9BVJ7 150 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 MAP1LC3B2A6NCE7 125 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 TOX3O15405 576 aaPredicted RBP15.69■□□□□ 0.1
UPF1-210ENST00000600689 SRPXP78539 464 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 PMP22Q01453 160 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 JOSD1Q15040 202 aaPredicted RBP15.69■□□□□ 0.1
UPF1-210ENST00000600689 TMEM56Q96MV1 263 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 MAP1LC3BQ9GZQ8 125 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 ERRFI1Q9UJM3 462 aaPredicted RBP15.69■□□□□ 0.1
UPF1-210ENST00000600689 TMEM56-RWDD3S4R434 201 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 CACNA1DQ01668 2161 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 A0A096LPE4 126 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 A0A1W2PPZ6 126 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 PPP5D1E7EU14 171 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 ZNF737O75373 536 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 SCGB1D1O95968 90 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 UCP3P55916 312 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 C21orf62-AS1Q17RA5 79 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 CEACAM16Q2WEN9 425 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 SLC25A53Q5H9E4 307 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 ADPRHL1Q8NDY3 354 aa15.69■□□□□ 0.1
UPF1-210ENST00000600689 LRRC3CA6NJW4 275 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 H7BYZ3 331 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 SYNGR3O43761 229 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 GALR1P47211 349 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 FAM3BP58499 235 aaPredicted RBP15.68■□□□□ 0.1
UPF1-210ENST00000600689 IL24Q13007 206 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 ZDHHC23Q8IYP9 409 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 PSENENQ9NZ42 101 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 PILRBQ9UKJ0 227 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 KCNS2Q9ULS6 477 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 IGKV1-6A0A0C4DH72 117 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 CHRNA7P36544 502 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 PMS2CLQ68D20 193 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 TMEM54Q969K7 222 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 SLC39A9Q9NUM3 307 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 PRSS50Q9UI38 385 aa15.68■□□□□ 0.1
UPF1-210ENST00000600689 CHCHD2Q9Y6H1 151 aaPredicted RBP15.68■□□□□ 0.1
UPF1-210ENST00000600689 A0A0U1RQK1 487 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 PGLYRP1O75594 196 aaPredicted RBP15.67■□□□□ 0.1
UPF1-210ENST00000600689 OPN1MWP04001 364 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 OPN1MW2P0DN77 364 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 OPN1MW3P0DN78 364 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 CRYGSP22914 178 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 FUT6P51993 359 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 GNB2P62879 340 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 RAB35Q15286 201 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 C10orf128Q5T292 105 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 TMEM211Q6ICI0 200 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 DAZAP2Q15038 168 aaPredicted RBP15.67■□□□□ 0.1
UPF1-210ENST00000600689 FAM27BQ5VT28 67 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 C20orf204Q6ZNR8 217 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 OR56B2PQ8NGI1 322 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 OR5B12Q96R08 314 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 RNF115Q9Y4L5 304 aa15.67■□□□□ 0.1
UPF1-210ENST00000600689 EIF3IQ13347 325 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms