RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	NAPSA	O96009	420 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	AKAIN1	P0CW23	69 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	SPN	P16150	400 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	NAT1	P18440	290 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	DTYMK	P23919	212 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	BTG1	P62324	171 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	AES	Q08117	197 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	EDDM3A	Q14507	147 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	GRK1	Q15835	563 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	ESCO2	Q56NI9	601 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	KLF17	Q5JT82	389 aa	Predicted RBP	10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	RSBN1	Q5VWQ0	802 aa	Predicted RBP	10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	STEAP1B	Q6NZ63	245 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	LYPD2	Q6UXB3	125 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF497	Q6ZNH5	498 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	C5orf24	Q7Z6I8	188 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	FGFRL1	Q8N441	504 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	TPRX1	Q8N7U7	411 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	TMEM185A	Q8NFB2	350 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	BEST4	Q8NFU0	473 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	OR4D10	Q8NGI6	311 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	OR4C16	Q8NGL9	310 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	CCDC107	Q8WV48	283 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	SDSL	Q96GA7	329 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	COQ2	Q96H96	371 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	SNX22	Q96L94	193 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	DUX5	Q96PT3	197 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	TINAGL1	Q9GZM7	467 aa	Predicted RBP	10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	SEBOX	Q9HB31	216 aa	Predicted RBP	10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	KIF25	Q9UIL4	384 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	INSIG2	Q9Y5U4	225 aa		10.44	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF736	B4DX44	427 aa	Predicted RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012		F5H0A9	414 aa	Predicted RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	SIGLEC5	O15389	551 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	ADAM20	O43506	726 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	PMP2	P02689	132 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	CSN2	P05814	226 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	RNASE1	P07998	156 aa	Known RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	BTC	P35070	178 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	HRH1	P35367	487 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	RFX2	P48378	723 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	SEC61A1	P61619	476 aa	Known RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	IL13RA1	P78552	427 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	BAMBI	Q13145	260 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	DYRK1A	Q13627	763 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	MUC20	Q8N307	709 aa	Predicted RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF561	Q8N587	486 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	C7orf50	Q9BRJ6	194 aa	Known RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	TMEM246	Q9BRR3	403 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF286A	Q9HBT8	521 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012		Q9N2K0	584 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	MCUB	Q9NWR8	336 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF107	Q9UII5	783 aa	Predicted RBP	10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	PKD1L1	Q8TDX9	2849 aa		10.43	□□□□□ -0.74
UPF1-208	ENST00000600012	TRBV6-6	A0A0A6YYG2	114 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	TMEM30CP	A0ZSE6	113 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	MEX3A	A1L020	520 aa	Known RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	POM121C	A8CG34	1229 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CENPX	A8MT69	81 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CLDN34	H7C241	214 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012		K7N7A8	449 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	RAB3D	O95716	219 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	PTTG1	O95997	202 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	TK1	P04183	234 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CD74	P04233	296 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	GLIPR1	P48060	266 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	KCNJ3	P48549	501 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CCR6	P51684	374 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	RNASE10	Q5GAN6	216 aa	Known RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	KRBOX4	Q5JUW0	171 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	ATPAF1	Q5TC12	328 aa	Predicted RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	SLC35E4	Q6ICL7	350 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	MZT2B	Q6NZ67	158 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	GDPD3	Q7L5L3	318 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	NRARP	Q7Z6K4	114 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	BCL6B	Q8N143	479 aa	Predicted RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	GAPT	Q8N292	157 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CENPS	Q8N2Z9	138 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	OR5H2	Q8NGV7	314 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	OR56B4	Q8NH76	319 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	PPP1R35	Q8TAP8	253 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	ENKUR	Q8TC29	256 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CHPT1	Q8WUD6	406 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	ZNF48	Q96MX3	618 aa	Predicted RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	MS4A7	Q9GZW8	240 aa	Predicted RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	RIMS4	Q9H426	269 aa	Predicted RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	UNKL	Q9H9P5	680 aa	Known RBP	10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	CTSZ	Q9UBR2	303 aa		10.42	□□□□□ -0.74
UPF1-208	ENST00000600012	MEIKIN	A0A087WXM9	373 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	TNFRSF13B	O14836	293 aa	Predicted RBP	10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	MGST3	O14880	152 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	FCN3	O75636	299 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	AMY2A	P04746	511 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	GSTT2	P0CG29	244 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	PPIAL4G	P0DN37	164 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	RCC1	P18754	421 aa	Predicted RBP	10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	FAU	P35544	74 aa	Known RBP	10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	EDDM3B	P56851	147 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	ARPC4	P59998	168 aa		10.41	□□□□□ -0.74
UPF1-208	ENST00000600012	HLA-DRB3	P79483	266 aa		10.41	□□□□□ -0.74

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