RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MBNL3Q9NUK0 354 aaKnown RBP7.77□□□□□ -1.17
TRIM28-208ENST00000597172 MEIKINA0A087WXM9 373 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 A0A1W2PQ09 198 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 ANKRD20A5PA0PJZ0 165 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 ODAMA1E959 279 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 MEX3AA1L020 520 aaKnown RBP7.76□□□□□ -1.17
TRIM28-208ENST00000597172 POM121CA8CG34 1229 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 GPR37O15354 613 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 PLA2G10O15496 165 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 UPK1BO75841 260 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 TGFAP01135 160 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 GSTT2P0CG29 244 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 GSTT2BP0CG30 244 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 IL7P13232 177 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 CBX5P45973 191 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 EDDM3BP56851 147 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 SSBP1Q04837 148 aaKnown RBP7.76□□□□□ -1.17
TRIM28-208ENST00000597172 KLF9Q13886 244 aaPredicted RBP7.76□□□□□ -1.17
TRIM28-208ENST00000597172 TMEM200BQ69YZ2 307 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 OR52W1Q6IF63 320 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 Q6ZS49 121 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 BTN2A1Q7KYR7 527 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 LY6G5BQ8NDX9 201 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 MRGPRDQ8TDS7 321 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 CHMP1AQ9HD42 196 aaPredicted RBP7.76□□□□□ -1.17
TRIM28-208ENST00000597172 TRAPPC2LQ9UL33 140 aa7.76□□□□□ -1.17
TRIM28-208ENST00000597172 IGKV1-6A0A0C4DH72 117 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 FUOMA2VDF0 154 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 TRDCB7Z8K6 153 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 C22orf46C9J442 243 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 C12orf77C9JDV5 145 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 C15orf65H3BRN8 121 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 TRIM77I1YAP6 450 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 CD3DP04234 171 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 SCTP09683 121 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 HLA-DMAP28067 261 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 RCVRNP35243 200 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 NPY4RP50391 375 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 RPL31P62899 125 aaKnown RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 MRPS15P82914 257 aaKnown RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 PAX2Q02962 417 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 MEF2CQ06413 473 aaPredicted RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 C17orf58Q2M2W7 97 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 STEAP3Q658P3 488 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 NLRC3Q7RTR2 1065 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 C11orf42Q8N5U0 333 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 TMEM229BQ8NBD8 167 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 BEST4Q8NFU0 473 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 SETD6Q8TBK2 473 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 H1FXQ92522 213 aaKnown RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 BORCS5Q969J3 196 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 SSBP3Q9BWW4 388 aaPredicted RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 IFT46Q9NQC8 304 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 ABCB10Q9NRK6 738 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 CLN8Q9UBY8 286 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 ZNF107Q9UII5 783 aaPredicted RBP7.75□□□□□ -1.17
TRIM28-208ENST00000597172 ANXA10Q9UJ72 324 aa7.75□□□□□ -1.17
TRIM28-208ENST00000597172 LOC105371242A0A075B767 164 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 LINC00854A0A1B0GVQ3 168 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 hADV38S2A0JD32 116 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 A8MXK9 166 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ECDO95905 644 aaPredicted RBP7.74□□□□□ -1.17
TRIM28-208ENST00000597172 CD74P04233 296 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 GZMHP20718 246 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 RFX2P48378 723 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 DLX6P56179 175 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ERVFRD-1P60508 538 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 GNB2P62879 340 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ZNF273Q14593 569 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 HERPUD1Q15011 391 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 HMGN3Q15651 99 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ESCO2Q56NI9 601 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 IGSF11Q5DX21 431 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 TOMM5Q8N4H5 51 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ZNF565Q8N9K5 539 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 OR4D10Q8NGI6 311 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 OR1L1Q8NH94 360 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 RFESDQ8TAC1 157 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 C8orf46Q8TAG6 207 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 UBALD1Q8TB05 177 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 DACT3Q96B18 629 aaPredicted RBP7.74□□□□□ -1.17
TRIM28-208ENST00000597172 LINC00574Q9H8X3 128 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 TAF9BQ9HBM6 251 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 ZNF286AQ9HBT8 521 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 OR6C3Q9NZP0 311 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 RPUSD1Q9UJJ7 312 aaKnown RBP7.74□□□□□ -1.17
TRIM28-208ENST00000597172 TBC1D24Q9ULP9 559 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 POLR3KQ9Y2Y1 108 aaPredicted RBP7.74□□□□□ -1.17
TRIM28-208ENST00000597172 LINC00312Q9Y6C7 94 aa7.74□□□□□ -1.17
TRIM28-208ENST00000597172 TRBV23-1A0A0A0MS06 115 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 KBTBD11-OT1A0A1B0GTJ5 212 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 ZNF736B4DX44 427 aaPredicted RBP7.73□□□□□ -1.17
TRIM28-208ENST00000597172 NPIPB11E5RHQ5 1161 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 M0QYG6 137 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 SDCBPO00560 298 aaPredicted RBP7.73□□□□□ -1.17
TRIM28-208ENST00000597172 FABP7O15540 132 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 MMP23AO75900 390 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 HBZP02008 142 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 PMP2P02689 132 aa7.73□□□□□ -1.17
TRIM28-208ENST00000597172 CSF1P09603 554 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms