RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRDCB7Z8K6 153 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SNRPEP62304 92 aaKnown RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 GPR157Q5UAW9 335 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 TMEM268Q5VZI3 342 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 STUMQ69YW2 141 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 LRRTM1Q86UE6 522 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 MRPL24Q96A35 216 aaKnown RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 KLHDC3Q9BQ90 382 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 BET1LQ9NYM9 111 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 MTFP1Q9UDX5 166 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 NKX2-1P43699 371 aaPredicted RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 H3F3AP84243 136 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 BAMBIQ13145 260 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 ALKAL2Q6UX46 152 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 HIST2H3AQ71DI3 136 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 TMEM18Q96B42 140 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 POM121L2Q96KW2 1035 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SNX22Q96L94 193 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 PARD6GQ9BYG4 376 aaPredicted RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 FOXH1O75593 365 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 CYB5R3P00387 301 aaPredicted RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 IGHV3-13P01766 116 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 IGHV3-7P01780 117 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 CELA3BP08861 270 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR2B8PP59922 312 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SUMO1P63165 101 aaKnown RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 AESQ08117 197 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 ASAH1Q13510 395 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 AARDQ4LEZ3 155 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SPNS3Q6ZMD2 512 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 LYSMD2Q8IV50 215 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR10D4PQ8NGN7 298 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 KCNK15Q9H427 330 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 CBLN4Q9NTU7 201 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 RASL12Q9NYN1 266 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 C1RLQ9NZP8 487 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 A0A1W2PNU3 283 aaPredicted RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 GPR37O15354 613 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SYNGR1O43759 233 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 CST4P01036 141 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SULT1A2P50226 295 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 FAAP20Q6NZ36 180 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR5M8Q8NGP6 311 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 NEIL1Q96FI4 390 aaPredicted RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 FYTTD1Q96QD9 318 aaKnown RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 C1QTNF5Q9BXJ0 243 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 KCNIP2Q9NS61 270 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 COL4A3Q01955 1670 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 ST8SIA3O43173 380 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 ADH4P08319 380 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR8U8P0C7N1 319 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 PTHLHP12272 177 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 PMELP40967 661 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 PPT1P50897 306 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 HNF4GQ14541 408 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR5AP2Q8NGF4 316 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SLIRPQ9GZT3 109 aaKnown RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 MYLKQ15746 1914 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OMGP23515 440 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 ERVS71-1P61550 626 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 BTG1P62324 171 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 ZNF816Q0VGE8 651 aaPredicted RBP8.44□□□□□ -1.06
LIG3-216ENST00000593099 PSG7Q13046 419 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 CCDC144NLQ6NUI1 221 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 FBLIM1Q8WUP2 373 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 SPRY4Q9C004 299 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 OR2D2Q9H210 308 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 TMEM106BQ9NUM4 274 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 AK3Q9UIJ7 227 aa8.44□□□□□ -1.06
LIG3-216ENST00000593099 A0A1B0GV50 99 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 A0A1B0GV90 55 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 IQCJQ1A5X6 159 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SLC16A12Q6ZSM3 486 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 TGIF2LYQ8IUE0 185 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 TGIF2LXQ8IUE1 241 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SAXO1Q8IYX7 474 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 FAM168AQ92567 244 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SLC35E1Q96K37 410 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 ZNF714Q96N38 554 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SULT4A1Q9BR01 284 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SRRQ9GZT4 340 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 ZNF430Q9H8G1 570 aaPredicted RBP8.43□□□□□ -1.06
LIG3-216ENST00000593099 LSM2Q9Y333 95 aaKnown RBP8.43□□□□□ -1.06
LIG3-216ENST00000593099 ZNF318Q5VUA4 2279 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 hCG_38984A0A1B0GV85 526 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 A0A1W2PPV4 95 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 C17orf100A8MU93 164 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 FCGR3BO75015 233 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SDSLQ96GA7 329 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 MARS2Q96GW9 593 aaKnown RBP8.43□□□□□ -1.06
LIG3-216ENST00000593099 ANXA10Q9UJ72 324 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 RAB29O14966 203 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 KITLGP21583 273 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 MPV17P39210 176 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 SORDQ00796 357 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 OPCMLQ14982 345 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 ZNF546Q86UE3 836 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 CCDC190Q86UF4 302 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 CHAC2Q8WUX2 184 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 PTX4Q96A99 478 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms