RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TRAV39A0A0B4J263 110 aa16.61■□□□□ 0.25
CLIP3-206ENST00000593074 SULT1A2P50226 295 aa16.61■□□□□ 0.25
CLIP3-206ENST00000593074 GNMTQ14749 295 aa16.61■□□□□ 0.25
CLIP3-206ENST00000593074 SMIM3Q9BZL3 60 aa16.61■□□□□ 0.25
CLIP3-206ENST00000593074 MMP26Q9NRE1 261 aa16.61■□□□□ 0.25
CLIP3-206ENST00000593074 ADAM20O43506 726 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 TNFSF12O43508 249 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 GCH1P30793 250 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 NHLH1Q02575 133 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 TBR1Q16650 682 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 WDR82Q6UXN9 313 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 ZNF826PQ6ZT77 177 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 BOLLQ8N9W6 283 aaKnown RBP16.6■□□□□ 0.25
CLIP3-206ENST00000593074 BSCL2Q96G97 398 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-206ENST00000593074 GLS2Q9UI32 602 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 FZR1Q9UM11 496 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 SVILO95425 2214 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 PSPNO60542 156 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 IGLV2-14P01704 120 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 CEACAM8P31997 349 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-206ENST00000593074 NKX2-1P43699 371 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-206ENST00000593074 FABP6P51161 128 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 SFXN3Q9BWM7 321 aa16.6■□□□□ 0.25
CLIP3-206ENST00000593074 PIGBOS1A0A0B4J2F0 54 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 K7ENP7 123 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 WNT9BO14905 357 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 CEBPDP49716 269 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-206ENST00000593074 TIMM23BQ5SRD1 257 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 IL34Q6ZMJ4 242 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 ACP7Q6ZNF0 438 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 PRR7Q8TB68 274 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 OR14J1Q9UGF5 321 aa16.59■□□□□ 0.25
CLIP3-206ENST00000593074 GFRA3O60609 400 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 PXDC1Q5TGL8 231 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 PRAMEF6Q5VXH4 476 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 CLEC9AQ6UXN8 241 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 PRR18Q8N4B5 295 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 CISD2Q8N5K1 135 aaKnown RBP16.58■□□□□ 0.25
CLIP3-206ENST00000593074 S100PBPQ96BU1 408 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 MS4A7Q9GZW8 240 aaPredicted RBP16.58■□□□□ 0.25
CLIP3-206ENST00000593074 WFDC1Q9HC57 220 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 MSL2Q9HCI7 577 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 MSRB2Q9Y3D2 182 aa16.58■□□□□ 0.25
CLIP3-206ENST00000593074 BORCS7-ASMTA0A0B4J1R7 106 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 TMEM30CPA0ZSE6 113 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 A6NLC8 198 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 HEXAP06865 529 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 AKR1E2Q96JD6 320 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 COQ3Q9NZJ6 369 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 PLA2G2EQ9NZK7 142 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 PRR14LQ5THK1 2151 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 BOD1L1Q8NFC6 3051 aa16.58■□□□□ 0.24
CLIP3-206ENST00000593074 FBXO24O75426 580 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 MED6O75586 246 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 APOC3P02656 99 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 LPAR6P43657 344 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 ID3Q02535 119 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 SLC35E4Q6ICL7 350 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 OR2C3Q8N628 320 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 GINS3Q9BRX5 216 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 PRRG2O14669 202 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 HSPA12AO43301 675 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 PVALBP20472 110 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-206ENST00000593074 ZNF83P51522 516 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 POLR2GP62487 172 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLIP3-206ENST00000593074 EWSR1Q01844 656 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLIP3-206ENST00000593074 PJVKQ0ZLH3 352 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 C3orf36Q3SXR2 165 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 ALKBH2Q6NS38 261 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 OR51H1Q8NH63 302 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 MUCL1Q96DR8 90 aa16.57■□□□□ 0.24
CLIP3-206ENST00000593074 NARS2Q96I59 477 aaKnown RBP16.57■□□□□ 0.24
CLIP3-206ENST00000593074 TMEM218A2RU14 115 aa16.56■□□□□ 0.24
CLIP3-206ENST00000593074 SLC25A6P12236 298 aa16.56■□□□□ 0.24
CLIP3-206ENST00000593074 NHLH2Q02577 135 aa16.56■□□□□ 0.24
CLIP3-206ENST00000593074 SMIM21Q3B7S5 101 aa16.56■□□□□ 0.24
CLIP3-206ENST00000593074 CXorf66Q5JRM2 361 aaPredicted RBP16.56■□□□□ 0.24
CLIP3-206ENST00000593074 PARP11Q9NR21 331 aa16.56■□□□□ 0.24
CLIP3-206ENST00000593074 LYRM2Q9NU23 88 aaPredicted RBP16.56■□□□□ 0.24
CLIP3-206ENST00000593074 DSPP15924 2871 aaKnown RBP16.56■□□□□ 0.24
CLIP3-206ENST00000593074 SERPINE2P07093 398 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 SEC11BP0C7V7 166 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 PSG2P11465 335 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 MMP9P14780 707 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 TDGF1P3P51864 188 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 BLOC1S1P78537 153 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 MZT1Q08AG7 82 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.55■□□□□ 0.24
CLIP3-206ENST00000593074 Q8NA96 180 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 PARP12Q9H0J9 701 aaKnown RBP16.55■□□□□ 0.24
CLIP3-206ENST00000593074 UFSP2Q9NUQ7 469 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 SPTBN2O15020 2390 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 IFNL4K9M1U5 179 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 M0R1B8 84 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 SSSCA1O60232 199 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 PTBP3O95758 552 aaKnown RBP16.55■□□□□ 0.24
CLIP3-206ENST00000593074 SPP1P10451 314 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 HOXA4Q00056 320 aaPredicted RBP16.55■□□□□ 0.24
CLIP3-206ENST00000593074 MSMPQ1L6U9 139 aa16.55■□□□□ 0.24
CLIP3-206ENST00000593074 DOLPP1Q86YN1 238 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms