RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CCBE1Q6UXH8 406 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 Q6ZPA2 131 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 CEACAM19Q7Z692 300 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 COMMD1Q8N668 190 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 KLHDC1Q8N7A1 406 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 OR6M1Q8NGM8 313 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 Q96M66 194 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 NEDD4LQ96PU5 975 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 NKX3-1Q99801 234 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 URM1Q9BTM9 101 aaKnown RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 SELENOIQ9C0D9 397 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 SERTAD4Q9NUC0 356 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 ETAA1Q9NY74 926 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 NKX1-2Q9UD57 310 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 PEX16Q9Y5Y5 336 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 C15orf65H3BRN8 121 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 SDCBPO00560 298 aaPredicted RBP8.4□□□□□ -1.06
LIG3-212ENST00000590181 HSPB6O14558 160 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 FBXO24O75426 580 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 HTR2CP28335 458 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 CD1BP29016 333 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 ZNF137PP52743 207 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 LOXL3P58215 753 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 MOB1BQ7L9L4 216 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 OR2W3Q7Z3T1 314 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 CENPVQ7Z7K6 275 aaPredicted RBP8.4□□□□□ -1.06
LIG3-212ENST00000590181 ZFP41Q8N8Y5 198 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 OR13C5Q8NGS8 318 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 PLPPR1Q8TBJ4 325 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 MRGPRDQ8TDS7 321 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 WIPF2Q8TF74 440 aaPredicted RBP8.4□□□□□ -1.06
LIG3-212ENST00000590181 CHCHD6Q9BRQ6 235 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 SLC25A33Q9BSK2 321 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 MBNL3Q9NUK0 354 aaKnown RBP8.4□□□□□ -1.06
LIG3-212ENST00000590181 GFOD1Q9NXC2 390 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 MOB4Q9Y3A3 225 aa8.4□□□□□ -1.06
LIG3-212ENST00000590181 PNMA8CA0A1B0GUJ8 204 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 MEX3AA1L020 520 aaKnown RBP8.39□□□□□ -1.07
LIG3-212ENST00000590181 PDCD5O14737 125 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 SLC22A1O15245 554 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 VSIG10L2P0DP72 767 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 RPS27AP62979 156 aaKnown RBP8.39□□□□□ -1.07
LIG3-212ENST00000590181 TBCEQ15813 527 aaPredicted RBP8.39□□□□□ -1.07
LIG3-212ENST00000590181 SYT6Q5T7P8 510 aaPredicted RBP8.39□□□□□ -1.07
LIG3-212ENST00000590181 SLC25A48Q6ZT89 311 aaKnown RBP8.39□□□□□ -1.07
LIG3-212ENST00000590181 TMEM219Q86XT9 240 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 OR4X2Q8NGF9 303 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 OR2T10Q8NGZ9 312 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 RFESDQ8TAC1 157 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 CHPT1Q8WUD6 406 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 NRG4Q8WWG1 115 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 GALMQ96C23 342 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 MGLLQ99685 303 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 TMED9Q9BVK6 235 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 TM2D1Q9BX74 207 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 TMEM59Q9BXS4 323 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 ABRACLQ9P1F3 81 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 JPT1Q9UK76 154 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 HSF4Q9ULV5 492 aa8.39□□□□□ -1.07
LIG3-212ENST00000590181 TRBV6-6A0A0A6YYG2 114 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 TRAV1-2A0A0B4J238 106 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 A0A1W2PPK0 400 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 SLC17A2O00624 439 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 ITGB1BP1O14713 200 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 HSD17B6O14756 317 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 LANCL1O43813 399 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 YPEL1O60688 119 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 ARSBP15848 533 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 SSTR5P35346 364 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 GDNFP39905 211 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 VHLP40337 213 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 GABARAPL2P60520 117 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 BLCAPP62952 87 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 ARL6IP1Q15041 203 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 PLA1AQ53H76 456 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 KPRPQ5T749 579 aaPredicted RBP8.38□□□□□ -1.07
LIG3-212ENST00000590181 SAMD5Q5TGI4 173 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 LIPKQ5VXJ0 399 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 ZNF367Q7RTV3 350 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 REC114Q7Z4M0 266 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 LRRTM1Q86UE6 522 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 TGIF2LXQ8IUE1 241 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 IZUMO1Q8IYV9 350 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 SVOPQ8N4V2 548 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 FAM89BQ8N5H3 189 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 MRAPQ8TCY5 172 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 YPEL2Q96QA6 119 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 OR5M11Q96RB7 305 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 ING3Q9NXR8 418 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 GNG12Q9UBI6 72 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 STEAP1Q9UHE8 339 aa8.38□□□□□ -1.07
LIG3-212ENST00000590181 NOTCH3Q9UM47 2321 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 IGHV1-3A0A0C4DH29 117 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 A0A1W2PPI3 338 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 MAGEA13PA6NCF6 341 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 TMEM14DPA8MWL7 114 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 C12orf77C9JDV5 145 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 ANKRD65E5RJM6 399 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 DIRAS3O95661 229 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 HBZP02008 142 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms