RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RTN4IP1Q8WWV3 396 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 ARL11Q969Q4 196 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 METTL9Q9H1A3 318 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 VCX3BQ9H321 246 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 PLCXD1Q9NUJ7 323 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 GFOD1Q9NXC2 390 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 GEMIN2O14893 280 aaKnown RBP16.51■□□□□ 0.23
VPS53-216ENST00000574029 ORC5O43913 435 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 ELANEP08246 267 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 LIMS3P0CW19 117 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 LIMS4P0CW20 117 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 CFHR3Q02985 330 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 DEFB136Q30KP8 78 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 Q3ZCU0 254 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 C9orf66Q5T8R8 295 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 FAM53AQ6NSI3 398 aaPredicted RBP16.51■□□□□ 0.23
VPS53-216ENST00000574029 GPR148Q8TDV2 347 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 S1PR3Q99500 378 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 ING4Q9UNL4 249 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 DIMT1Q9UNQ2 313 aaKnown RBP16.51■□□□□ 0.23
VPS53-216ENST00000574029 U3KQK5 164 aa16.51■□□□□ 0.23
VPS53-216ENST00000574029 MOSP00540 346 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 CD2P06729 351 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 IL3RAP26951 378 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 AQP4P55087 323 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 MPV17LQ2QL34 196 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 NKAPLQ5M9Q1 402 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 OR8H1Q8NGG4 311 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 UBALD1Q8TB05 177 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 GGHQ92820 318 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 TMEM138Q9NPI0 162 aa16.5■□□□□ 0.23
VPS53-216ENST00000574029 CNOT2Q9NZN8 540 aaKnown RBP16.5■□□□□ 0.23
VPS53-216ENST00000574029 EFCAB10A6NFE3 127 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 RRP9O43818 475 aaKnown RBP16.49■□□□□ 0.23
VPS53-216ENST00000574029 ATP6V1G2O95670 118 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 MT-ND4P03905 459 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 CSTBP04080 98 aaKnown RBP16.49■□□□□ 0.23
VPS53-216ENST00000574029 ZNF93P35789 620 aaPredicted RBP16.49■□□□□ 0.23
VPS53-216ENST00000574029 ETV1P50549 477 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 CCDC58Q4VC31 144 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 DDI2Q5TDH0 399 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 XAF1Q6GPH4 301 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 RPL22L1Q6P5R6 122 aaKnown RBP16.49■□□□□ 0.23
VPS53-216ENST00000574029 ZNF497Q6ZNH5 498 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 CCDC107Q8WV48 283 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 TMEM106AQ96A25 262 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 TMEM80Q96HE8 168 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 PRR25Q96S07 402 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 RASL11BQ9BPW5 248 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 HSPB9Q9BQS6 159 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 SCOCQ9UIL1 159 aa16.49■□□□□ 0.23
VPS53-216ENST00000574029 IGHV3-43A0A0B4J1X8 118 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 ZNF736B4DX44 427 aaPredicted RBP16.48■□□□□ 0.23
VPS53-216ENST00000574029 TXNL1O43396 289 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 IGHG4P01861 327 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 IGHV3-43DP0DP04 118 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 SERPINA2P20848 420 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 ZNF137PP52743 207 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 ATAD3CQ5T2N8 411 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 FAM71E2Q8N5Q1 922 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 ZNF439Q8NDP4 499 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 C4orf3Q8WVX3 66 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 S100A13Q99584 98 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 PAK1IP1Q9NWT1 392 aaPredicted RBP16.48■□□□□ 0.23
VPS53-216ENST00000574029 PSORS1C1Q9UIG5 152 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 ZNF580Q9UK33 172 aa16.48■□□□□ 0.23
VPS53-216ENST00000574029 EXOSC1Q9Y3B2 195 aaKnown RBP16.48■□□□□ 0.23
VPS53-216ENST00000574029 SIRT4Q9Y6E7 314 aaPredicted RBP16.48■□□□□ 0.23
VPS53-216ENST00000574029 SEC14L6B5MCN3 397 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 SLC31A2O15432 143 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 ZNF780AO75290 641 aaPredicted RBP16.47■□□□□ 0.23
VPS53-216ENST00000574029 BDKRB2P30411 391 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 PPP3R1P63098 170 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 ST3GAL4Q11206 333 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 FHL3Q13643 280 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 TMPRSS11AQ6ZMR5 421 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 SLC25A48Q6ZT89 311 aaKnown RBP16.47■□□□□ 0.23
VPS53-216ENST00000574029 FKBP14Q9NWM8 211 aa16.47■□□□□ 0.23
VPS53-216ENST00000574029 A0A1W2PP11 408 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 AIPO00170 330 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 IGF1P05019 195 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 MYL12AP19105 171 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 VDAC1P21796 283 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 PSMB8P28062 276 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 SOX6P35712 828 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 VHLP40337 213 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 ECI1P42126 302 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 F2RL1P55085 397 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 MED21Q13503 144 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 NEK7Q8TDX7 302 aa16.46■□□□□ 0.23
VPS53-216ENST00000574029 C12orf77C9JDV5 145 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 GTF2F2P13984 249 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 MYF6P23409 242 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 HSPA13P48723 471 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 ZNF134P52741 427 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 TMEM30BQ3MIR4 351 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 C6orf141Q5SZD1 244 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 STX19Q8N4C7 294 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 BPIFB6Q8NFQ5 453 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 MYOZ3Q8TDC0 251 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms