RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 IGHV3-43A0A0B4J1X8 118 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 RPP14O95059 124 aaKnown RBP9.8□□□□□ -0.84
CCDC40-208ENST00000572270 IGHV3-43DP0DP04 118 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 GZMHP20718 246 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 VHLP40337 213 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 MAGEA2P43356 314 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 CXCR4P61073 352 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 CDK5R1Q15078 307 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 PLGLAQ15195 96 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 RPEL1Q2QD12 228 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 Q3ZCU0 254 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 CD200R1LQ6Q8B3 271 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 SLC16A13Q7RTY0 426 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 PPP1R27Q86WC6 154 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 DYNLRB2Q8TF09 96 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 ARL11Q969Q4 196 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 SPSB1Q96BD6 273 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 OPALINQ96PE5 141 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 EFCAB1Q9HAE3 211 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF355PQ9NSJ1 428 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 MAGEL2Q9UJ55 1249 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 TP53TG1Q9Y2A0 90 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 NUBP2Q9Y5Y2 271 aa9.8□□□□□ -0.84
CCDC40-208ENST00000572270 IGKV1-9A0A0C4DH69 117 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 A0A0G2JLM5 398 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 SLC31A2O15432 143 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 MAGEB4O15481 346 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-208ENST00000572270 SPRY2O43597 315 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 AIREO43918 545 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 OR2A4O95047 310 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 HMGN1P05114 100 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 ATF1P18846 271 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 TCTAP57738 103 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF45Q02386 682 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 PAX5Q02548 391 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 PPP1R8Q12972 351 aaKnown RBP9.79□□□□□ -0.84
CCDC40-208ENST00000572270 MICAQ29983 383 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 AKIRIN2Q53H80 203 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 SAXO1Q8IYX7 474 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 PLPPR1Q8TBJ4 325 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 NSMCE2Q96MF7 247 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 NR1H4Q96RI1 486 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-208ENST00000572270 CNN2Q99439 309 aaKnown RBP9.79□□□□□ -0.84
CCDC40-208ENST00000572270 NDE1Q9NXR1 346 aa9.79□□□□□ -0.84
CCDC40-208ENST00000572270 TRAV24A0A0B4J272 114 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF785A8K8V0 405 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 LANCL1O43813 399 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 MITFO75030 526 aaPredicted RBP9.78□□□□□ -0.84
CCDC40-208ENST00000572270 NDUFA3O95167 84 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 IFNA4P05014 189 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 COX4I1P13073 169 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF20P17024 532 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 MECP2P51608 486 aaKnown RBP9.78□□□□□ -0.84
CCDC40-208ENST00000572270 CX3CL1P78423 397 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 DYRK1AQ13627 763 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 GINS1Q14691 196 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 HACD2Q6Y1H2 254 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 TMEM179BQ7Z7N9 219 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 TCEANCQ8N8B7 351 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 MAPKAPK5-AS1Q8N8E1 139 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 NPBQ8NG41 125 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 UBALD1Q8TB05 177 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 CNIH3Q8TBE1 160 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 TSEN15Q8WW01 171 aaKnown RBP9.78□□□□□ -0.84
CCDC40-208ENST00000572270 RITA1Q96K30 269 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 RDH12Q96NR8 316 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 NIPSNAP1Q9BPW8 284 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 FAM103A1Q9BTL3 118 aaKnown RBP9.78□□□□□ -0.84
CCDC40-208ENST00000572270 SPAG4Q9NPE6 437 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 ADAM30Q9UKF2 790 aa9.78□□□□□ -0.84
CCDC40-208ENST00000572270 DNAH17Q9UFH2 4485 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 PKD1P98161 4303 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 LOC107986453A0A1B0GWG9 222 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 MSGN1A6NI15 193 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 ZNF670-ZNF695F2Z2N8 137 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 DBTP11182 482 aaKnown RBP9.77□□□□□ -0.85
CCDC40-208ENST00000572270 PSME3P61289 254 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 CD300LDQ6UXZ3 194 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 UTS2BQ765I0 119 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 LFNGQ8NES3 379 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 C2CD4CQ8TF44 421 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 ADAT3Q96EY9 351 aaPredicted RBP9.77□□□□□ -0.85
CCDC40-208ENST00000572270 TEX12Q9BXU0 123 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 GNG12Q9UBI6 72 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 PEF1Q9UBV8 284 aaKnown RBP9.77□□□□□ -0.85
CCDC40-208ENST00000572270 RAB21Q9UL25 225 aa9.77□□□□□ -0.85
CCDC40-208ENST00000572270 SAMHD1Q9Y3Z3 626 aaKnown RBP9.77□□□□□ -0.85
CCDC40-208ENST00000572270 TMEM30CPA0ZSE6 113 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 C15orf65H3BRN8 121 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 KRT8P05787 483 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 TMEM225BP0DP42 221 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 EGR2P11161 476 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-208ENST00000572270 APOC4P55056 127 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 DEFB135Q30KP9 77 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 Q6ZWC4 215 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 ZNF575Q86XF7 245 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 SLC35F2Q8IXU6 374 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 GVQW1Q8N7I0 195 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 POC5Q8NA72 575 aa9.76□□□□□ -0.85
CCDC40-208ENST00000572270 OR10G2Q8NGC3 310 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms