RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BEX2Q9BXY8 128 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 TMPRSS13Q9BYE2 586 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 C5orf66Q9H5L9 145 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 BEX1Q9HBH7 125 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 OR2W1Q9Y3N9 320 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 PPIAL4EA0A075B759 164 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 CRYM-AS1A6NIL9 109 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PPIAL4DF5H284 164 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 GPR31O00270 319 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 ATG12O94817 140 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PET100P0DJ07 73 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PPIAL4FP0DN26 164 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 GNLYP22749 145 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 GABRA2P47869 451 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 LUMP51884 338 aaPredicted RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 MEF2CQ06413 473 aaPredicted RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 PPP1R1AQ13522 171 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PDCD1Q15116 288 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 MSMPQ1L6U9 139 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 SWI5Q1ZZU3 235 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 HFEQ30201 348 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 LY6G6FQ5SQ64 297 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 CLEC18BQ6UXF7 455 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 GSG1LQ6UXU4 331 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 Q6ZS46 218 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 LGI3Q8N145 548 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 TCTEX1D1Q8N7M0 179 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 LRTM2Q8N967 370 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 ASCC1Q8N9N2 400 aaKnown RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 UXS1Q8NBZ7 420 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 OR11H7Q8NGC8 314 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 OR5M8Q8NGP6 311 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 ANGPTL6Q8NI99 470 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 LINC01560Q8TB33 94 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 ITLN2Q8WWU7 325 aaPredicted RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 RTN4IP1Q8WWV3 396 aaPredicted RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 MAFIPQ8WZ33 124 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 IL22RA2Q969J5 263 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 MRGPRFQ96AM1 343 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PDCD10Q9BUL8 212 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 TAF9BQ9HBM6 251 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 FAM212BQ9NTI7 297 aaPredicted RBP6.68□□□□□ -1.34
VPS39-213ENST00000570062 CBLN4Q9NTU7 201 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 PPIAL4AQ9Y536 164 aa6.68□□□□□ -1.34
VPS39-213ENST00000570062 SPTAN1Q13813 2472 aaKnown RBP6.67□□□□□ -1.34
VPS39-213ENST00000570062 IGKV1D-8A0A087WSZ0 117 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TRGV10A0A0A0MS01 117 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 IGHV1-69-2A0A0G2JMI3 117 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 A0A1W2PPH5 198 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 hADV38S2A0JD32 116 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 FAM221AA4D161 298 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 DBX1A6NMT0 343 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 HMSDA8MTL9 139 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TMEM178BH3BS89 294 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 BOLA2-SMG1P6H3BVE0 249 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.67□□□□□ -1.34
VPS39-213ENST00000570062 HSPB6O14558 160 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 ITGB1BP1O14713 200 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 BET1O15155 118 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 SIGLEC5O15389 551 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 PSPNO60542 156 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 ZNF737O75373 536 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 IGLV1-40P01703 118 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 HEXAP06865 529 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 SCTP09683 121 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 AADACP22760 399 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 DNASE1P24855 282 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 OR3A1P47881 315 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 P2RX3P56373 397 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 PIGPP57054 158 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 STUMQ69YW2 141 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 ZNF788Q6ZQV5 615 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 C17orf107Q6ZR85 190 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 H1FOOQ8IZA3 346 aaPredicted RBP6.67□□□□□ -1.34
VPS39-213ENST00000570062 BATF2Q8N1L9 274 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 OR10V1Q8NGI7 309 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 OR2T35Q8NGX2 323 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 DYRK2Q92630 601 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 CORO2AQ92828 525 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TOMM40LQ969M1 308 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 C14orf79Q96F83 325 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 SPIN2AQ99865 258 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 SPIN2BQ9BPZ2 258 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 GON7Q9BXV9 100 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 NMES1Q9C002 83 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 SLC5A7Q9GZV3 580 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 NAA60Q9H7X0 242 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TMEM106BQ9NUM4 274 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TAS2R3Q9NYW6 316 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 IL36RNQ9UBH0 155 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 KAAG1Q9UBP8 84 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 CACFD1Q9UGQ2 172 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 JPT1Q9UK76 154 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 ITGB1BP2Q9UKP3 347 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 TMED3Q9Y3Q3 217 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 RBM7Q9Y580 266 aaKnown RBP6.67□□□□□ -1.34
VPS39-213ENST00000570062 KLF2Q9Y5W3 355 aaPredicted RBP6.67□□□□□ -1.34
VPS39-213ENST00000570062 MGAQ8IWI9 3026 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 COL12A1Q99715 3063 aa6.67□□□□□ -1.34
VPS39-213ENST00000570062 RELNP78509 3460 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms