RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SIGLEC8Q9NYZ4 499 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 ADAM30Q9UKF2 790 aa8.9□□□□□ -0.98
CLK3-222ENST00000568232 FOXA2Q9Y261 457 aaPredicted RBP8.9□□□□□ -0.98
CLK3-222ENST00000568232 SDCBPO00560 298 aaPredicted RBP8.89□□□□□ -0.99
CLK3-222ENST00000568232 CIB2O75838 187 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 CD7P09564 240 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 HSD17B1P14061 328 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 IL3RAP26951 378 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 ACTBP60709 375 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 ACTR3P61158 418 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 KLF5Q13887 457 aaPredicted RBP8.89□□□□□ -0.99
CLK3-222ENST00000568232 LCN12Q6JVE5 192 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 CYP2R1Q6VVX0 501 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 SSX6Q7RTT6 188 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 BCDIN3DQ7Z5W3 292 aaKnown RBP8.89□□□□□ -0.99
CLK3-222ENST00000568232 SLC35F2Q8IXU6 374 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 OR9G4Q8NGQ1 327 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 PP6455Q8WZ26 134 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 TMEM106AQ96A25 262 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 LRGUKQ96M69 825 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 OPALINQ96PE5 141 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 CNN2Q99439 309 aaKnown RBP8.89□□□□□ -0.99
CLK3-222ENST00000568232 NEURL2Q9BR09 285 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 OVOL2Q9BRP0 275 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 ADI1Q9BV57 179 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 NCOR1P1Q9H4R4 102 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 REEP1Q9H902 201 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 NEK6Q9HC98 313 aa8.89□□□□□ -0.99
CLK3-222ENST00000568232 DYNC1H1Q14204 4646 aaKnown RBP8.88□□□□□ -0.99
CLK3-222ENST00000568232 A0A0J9YWU9 116 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 LOC107986453A0A1B0GWG9 222 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 B2RBV5 119 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 TPPPO94811 219 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 CSN3P07498 182 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 EGR2P11161 476 aaPredicted RBP8.88□□□□□ -0.99
CLK3-222ENST00000568232 PRKACBP22694 351 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 ZNF134P52741 427 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 SYNJ2BPP57105 145 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 TPPP2P59282 170 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 LSAMPQ13449 338 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 OR2T5Q6IEZ7 315 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 LIN54Q6MZP7 749 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 SLC25A48Q6ZT89 311 aaKnown RBP8.88□□□□□ -0.99
CLK3-222ENST00000568232 PRSS35Q8N3Z0 413 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 Q8N402 240 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 OR2T29Q8NH02 315 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 CNIH3Q8TBE1 160 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 ARL11Q969Q4 196 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 FGGYQ96C11 551 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 SRD5A3Q9H8P0 318 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 FAM118AQ9NWS6 357 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 GFOD1Q9NXC2 390 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 ETAA1Q9NY74 926 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 ZNF581Q9P0T4 197 aa8.88□□□□□ -0.99
CLK3-222ENST00000568232 ANKRD34BA5PLL1 514 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 C15orf65H3BRN8 121 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 ARPC1BO15143 372 aaKnown RBP8.87□□□□□ -0.99
CLK3-222ENST00000568232 C5orf64Q2M2E5 130 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 C8orf31Q8N9H6 132 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 GIPC3Q8TF64 312 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 TBX5Q99593 518 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 ZNF251Q9BRH9 671 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 FAM103A1Q9BTL3 118 aaKnown RBP8.87□□□□□ -0.99
CLK3-222ENST00000568232 ADGRL4Q9HBW9 690 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 TVP23BQ9NYZ1 205 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 CNOT2Q9NZN8 540 aaKnown RBP8.87□□□□□ -0.99
CLK3-222ENST00000568232 ERGIC3Q9Y282 383 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 KLK5Q9Y337 293 aaPredicted RBP8.87□□□□□ -0.99
CLK3-222ENST00000568232 NUBP2Q9Y5Y2 271 aa8.87□□□□□ -0.99
CLK3-222ENST00000568232 OR11H12B2RN74 326 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 ZNF670-ZNF695F2Z2N8 137 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 FCN1O00602 326 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 NBR2O15453 112 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 TXNL1O43396 289 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 APOL3O95236 402 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 OCM2P0CE71 109 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 OCMP0CE72 109 aaPredicted RBP8.86□□□□□ -0.99
CLK3-222ENST00000568232 TMEM225BP0DP42 221 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 GZMHP20718 246 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 ATP6V1B2P21281 511 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 ZP3P21754 424 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 CRIP2P52943 208 aaPredicted RBP8.86□□□□□ -0.99
CLK3-222ENST00000568232 CX3CL1P78423 397 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 DYRK1AQ13627 763 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 CT45A1Q5HYN5 189 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 FAHD1Q6P587 224 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 UTS2BQ765I0 119 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 DEFB107AQ8IZN7 70 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 ZNF439Q8NDP4 499 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 OR52M1Q8NGK5 317 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 OR10AC1Q8NH08 325 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 CT45A3Q8NHU0 189 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 ABHD5Q8WTS1 349 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 CCDC107Q8WV48 283 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 UTP4Q969X6 686 aaKnown RBP8.86□□□□□ -0.99
CLK3-222ENST00000568232 SPSB1Q96BD6 273 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 C10orf35Q96D05 121 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 RHOFQ9HBH0 211 aa8.86□□□□□ -0.99
CLK3-222ENST00000568232 RANGRFQ9HD47 186 aaPredicted RBP8.86□□□□□ -0.99
CLK3-222ENST00000568232 CLN6Q9NWW5 311 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms