RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 GPR12P47775 334 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 DCTN2Q13561 401 aaKnown RBP14.76□□□□□ -0.05
CLN3-218ENST00000565688 ZNF695Q8IW36 515 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 OR8H1Q8NGG4 311 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 ST6GALNAC6Q969X2 333 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 TMEM80Q96HE8 168 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 MOSP00540 346 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 FSTP19883 344 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 GP2P55259 537 aaKnown RBP14.75□□□□□ -0.05
CLN3-218ENST00000565688 PNLIPRP3Q17RR3 467 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 C6orf183Q5T699 404 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 UNQ9370/PRO34162Q6UXP9 181 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 CDH26Q8IXH8 852 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 TMEM104Q8NE00 496 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 SETD9Q8NE22 299 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 OR13C5Q8NGS8 318 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 ORAI1Q96D31 301 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 P2RX4Q99571 388 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 RCC2Q9P258 522 aaKnown RBP14.75□□□□□ -0.05
CLN3-218ENST00000565688 CLEC2DQ9UHP7 191 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 TRAPPC2LQ9UL33 140 aa14.75□□□□□ -0.05
CLN3-218ENST00000565688 MRPS28Q9Y2Q9 187 aaKnown RBP14.75□□□□□ -0.05
CLN3-218ENST00000565688 A0A1W2PP11 408 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 RRP9O43818 475 aaKnown RBP14.74□□□□□ -0.05
CLN3-218ENST00000565688 LALBAP00709 142 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 ZNF137PP52743 207 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 RPS11P62280 158 aaKnown RBP eCLIP14.74□□□□□ -0.05
CLN3-218ENST00000565688 SYT6Q5T7P8 510 aaPredicted RBP14.74□□□□□ -0.05
CLN3-218ENST00000565688 TTC23Q5W5X9 447 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 TRAT1Q6PIZ9 186 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 SLC25A48Q6ZT89 311 aaKnown RBP14.74□□□□□ -0.05
CLN3-218ENST00000565688 C18orf65Q6ZTR6 163 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 Q8N9W7 124 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 UBALD1Q8TB05 177 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 ETAA1Q9NY74 926 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 GNG12Q9UBI6 72 aa14.74□□□□□ -0.05
CLN3-218ENST00000565688 TRAV8-7A0A075B6U6 113 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 TRBV5-7A0A0A0MS05 114 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 IGHV3-43A0A0B4J1X8 118 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 LINC01548A6NM66 108 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 C12orf77C9JDV5 145 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 CA11O75493 328 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 IGHV3-43DP0DP04 118 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 TAS2R43P59537 309 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 FOXE3Q13461 319 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 CXorf66Q5JRM2 361 aaPredicted RBP14.73□□□□□ -0.05
CLN3-218ENST00000565688 STEAP3Q658P3 488 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 RAB12Q6IQ22 244 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 GLIPR1L1Q6UWM5 242 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 JAGN1Q8N5M9 183 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 ZNF485Q8NCK3 441 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 CYGBQ8WWM9 190 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 MUL1Q969V5 352 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 PGLYRP3Q96LB9 341 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 S1PR3Q99500 378 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 RASL11BQ9BPW5 248 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 C8orf4Q9NR00 106 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 PLSCR3Q9NRY6 295 aa14.73□□□□□ -0.05
CLN3-218ENST00000565688 MAGEA13PA6NCF6 341 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 FAM90A10PA6NDY2 464 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 FAM90A7PA6NKC0 464 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 FAM90A23PA8MXZ1 464 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 H0YHG0 523 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 CCL24O00175 119 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 GLAP06280 429 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 CD69Q07108 199 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 GPR50Q13585 617 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 AWAT2Q6E213 333 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 GAPTQ8N292 157 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 RNF152Q8N8N0 203 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 ZNF439Q8NDP4 499 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 OR14A2Q96R54 314 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 PEX16Q9Y5Y5 336 aa14.72□□□□□ -0.05
CLN3-218ENST00000565688 EBAG9O00559 213 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 HBZP02008 142 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 ELANEP08246 267 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 CDX1P47902 265 aaPredicted RBP14.71□□□□□ -0.05
CLN3-218ENST00000565688 ST3GAL4Q11206 333 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 FAM53AQ6NSI3 398 aaPredicted RBP14.71□□□□□ -0.05
CLN3-218ENST00000565688 PACRGLQ8N7B6 248 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 ZFP41Q8N8Y5 198 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 OR8U1Q8NH10 309 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 OR4K15Q8NH41 348 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 THRSPQ92748 146 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 RAX2Q96IS3 184 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 B9D2Q9BPU9 175 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 DCLRE1BQ9H816 532 aa14.71□□□□□ -0.05
CLN3-218ENST00000565688 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.71□□□□□ -0.05
CLN3-218ENST00000565688 EFCAB10A6NFE3 127 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 SLC31A2O15432 143 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 SC5DO75845 299 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 RPLP1P05386 114 aaKnown RBP14.7□□□□□ -0.06
CLN3-218ENST00000565688 FUT3P21217 361 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 SOX6P35712 828 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 CAPGP40121 348 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 ZNF134P52741 427 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 DGCR2P98153 550 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 DOC2BQ14184 412 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 KIR2DS1Q14954 304 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 CT45A1Q5HYN5 189 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms