RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 Q3ZCU0 254 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 SYT6Q5T7P8 510 aaPredicted RBP13.42□□□□□ -0.26
CLK3-210ENST00000563112 GLT8D1Q68CQ7 371 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 TRAT1Q6PIZ9 186 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 UNQ9370/PRO34162Q6UXP9 181 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 MOB3BQ86TA1 216 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 LYPD6Q86Y78 171 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 LINC00311Q8N616 119 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 TMEM104Q8NE00 496 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 OR4X2Q8NGF9 303 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 OR4K15Q8NH41 348 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 UBALD1Q8TB05 177 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 TMED9Q9BVK6 235 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 IGHV3-43A0A0B4J1X8 118 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 TCRBV4S1A1TA0A5B7 111 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 SH2D7A6NKC9 451 aaPredicted RBP13.41□□□□□ -0.26
CLK3-210ENST00000563112 AMY1AP04745 511 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 AMY2AP04746 511 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 IGHV3-43DP0DP04 118 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 AQP4P55087 323 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 ZNF816Q0VGE8 651 aaPredicted RBP13.41□□□□□ -0.26
CLK3-210ENST00000563112 HNF4GQ14541 408 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 FBLN7Q53RD9 439 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 RBM48Q5RL73 367 aaKnown RBP13.41□□□□□ -0.26
CLK3-210ENST00000563112 PHYHIPQ92561 330 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 Q96M66 194 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 VCX3BQ9H321 246 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 KCNIP1Q9NZI2 227 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 GNG12Q9UBI6 72 aa13.41□□□□□ -0.26
CLK3-210ENST00000563112 IGHV1-3A0A0C4DH29 117 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 A0A1W2PRX2 142 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 ADARB2-AS1A8MUL3 147 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 C12orf77C9JDV5 145 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 G3V4G9 280 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 FGF16O43320 207 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 MPIG6BO95866 241 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 IGKV1D-33P01593 117 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 IGKV1-33P01594 117 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 LOXL3P58215 753 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 INSL4Q14641 139 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 HSD17B12Q53GQ0 312 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 CEACAM19Q7Z692 300 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 NRG4Q8WWG1 115 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 UFD1Q92890 307 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 FAM46BQ96A09 425 aa13.4□□□□□ -0.26
CLK3-210ENST00000563112 TSSC4Q9Y5U2 329 aaPredicted RBP13.4□□□□□ -0.26
CLK3-210ENST00000563112 UBE2QL1A1L167 161 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 PDCD6O75340 191 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 HBZP02008 142 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 PF4V1P10720 104 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 SRMP19623 302 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 VHLP40337 213 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 REG1BP48304 166 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 SLC35A2P78381 396 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 SAMD5Q5TGI4 173 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 GAPTQ8N292 157 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 PRR18Q8N4B5 295 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 NEDD4LQ96PU5 975 aa13.39□□□□□ -0.27
CLK3-210ENST00000563112 LSM2Q9Y333 95 aaKnown RBP13.39□□□□□ -0.27
CLK3-210ENST00000563112 PSMB11A5LHX3 300 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 TXNL1O43396 289 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 RGS10O43665 173 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 SC5DO75845 299 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 RCC1P18754 421 aaPredicted RBP13.38□□□□□ -0.27
CLK3-210ENST00000563112 MYF6P23409 242 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 EBI3Q14213 229 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 IRF3Q14653 427 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 BEAN1Q3B7T3 259 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 KHDC1LQ5JSQ8 128 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 NKAPLQ5M9Q1 402 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 C1orf100Q5SVJ3 147 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 FAM27D1Q5T7N8 215 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 LIPKQ5VXJ0 399 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 ZNF554Q86TJ5 538 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 LRRTM1Q86UE6 522 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 C5orf56Q8N8D9 126 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 OR2T10Q8NGZ9 312 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 KCNG3Q8TAE7 436 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 DUSP21Q9H596 190 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 TAF9BQ9HBM6 251 aa13.38□□□□□ -0.27
CLK3-210ENST00000563112 IGHV3-72A0A0B4J1Y9 119 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 NCBP2LA6PVI3 153 aaKnown RBP13.37□□□□□ -0.27
CLK3-210ENST00000563112 SERPINE3A8MV23 424 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 HSMCR30P0CW71 290 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 HTR2CP28335 458 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 CD1BP29016 333 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 GP2P55259 537 aaKnown RBP13.37□□□□□ -0.27
CLK3-210ENST00000563112 TRAM1Q15629 374 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 STEAP3Q658P3 488 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 SIGIRRQ6IA17 410 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 SLC25A48Q6ZT89 311 aaKnown RBP13.37□□□□□ -0.27
CLK3-210ENST00000563112 TGIF2LXQ8IUE1 241 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 IZUMO1Q8IYV9 350 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 OR10V1Q8NGI7 309 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 OR1L1Q8NH94 360 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 CHPT1Q8WUD6 406 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 RTN4IP1Q8WWV3 396 aaPredicted RBP13.37□□□□□ -0.27
CLK3-210ENST00000563112 SGCDQ92629 289 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 EAF1Q96JC9 268 aaPredicted RBP13.37□□□□□ -0.27
CLK3-210ENST00000563112 TMEM59Q9BXS4 323 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms