RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SDCBPO00560 298 aaPredicted RBP12.77□□□□□ -0.37
CLN3-208ENST00000561505 GEMIN2O14893 280 aaKnown RBP12.77□□□□□ -0.37
CLN3-208ENST00000561505 SLC31A2O15432 143 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 MAGEB3O15480 346 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 GPX5O75715 221 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 CDRT1O95170 752 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 HTR3BO95264 441 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 FADS2O95864 444 aaKnown RBP12.77□□□□□ -0.37
CLN3-208ENST00000561505 OR5H8P0DN80 308 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 RAB40BQ12829 278 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 ZNF260Q3ZCT1 412 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 CCDC58Q4VC31 144 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 CT45A1Q5HYN5 189 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 C1orf146Q5VVC0 180 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 LPCAT4Q643R3 524 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 CT45A3Q8NHU0 189 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 GPER1Q99527 375 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 ASCL2Q99929 193 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 METTL9Q9H1A3 318 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 TMEM138Q9NPI0 162 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 TAS2R4Q9NYW5 299 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 AASSQ9UDR5 926 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 SORL1Q92673 2214 aa12.77□□□□□ -0.37
CLN3-208ENST00000561505 LANCL1O43813 399 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 ZNF780AO75290 641 aaPredicted RBP12.76□□□□□ -0.37
CLN3-208ENST00000561505 OR7C1O76099 320 aaPredicted RBP12.76□□□□□ -0.37
CLN3-208ENST00000561505 OR8U8P0C7N1 319 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 LIMS3P0CW19 117 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 LIMS4P0CW20 117 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 VDAC1P21796 283 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 ALDH3A2P51648 485 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 GBX2P52951 348 aaPredicted RBP12.76□□□□□ -0.37
CLN3-208ENST00000561505 ZNF429Q86V71 674 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 SATL1Q86VE3 508 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 SBSPONQ8IVN8 264 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 GPR148Q8TDV2 347 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 TSEN15Q8WW01 171 aaKnown RBP12.76□□□□□ -0.37
CLN3-208ENST00000561505 KLK15Q9H2R5 256 aa12.76□□□□□ -0.37
CLN3-208ENST00000561505 PAK1IP1Q9NWT1 392 aaPredicted RBP12.76□□□□□ -0.37
CLN3-208ENST00000561505 C12orf77C9JDV5 145 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 EI24O14681 340 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 HLA-DRB1P01911 266 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 IGFBP3P17936 291 aaPredicted RBP12.75□□□□□ -0.37
CLN3-208ENST00000561505 RASSF2P50749 326 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 LSAMPQ13449 338 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 C19orf54Q5BKX5 351 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 RPL22L1Q6P5R6 122 aaKnown RBP12.75□□□□□ -0.37
CLN3-208ENST00000561505 MINDY2Q8NBR6 621 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 OR52I1Q8NGK6 324 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 OR1N2Q8NGR9 330 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 GNB4Q9HAV0 340 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 TPSG1Q9NRR2 321 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 CHCHD3Q9NX63 227 aaKnown RBP12.75□□□□□ -0.37
CLN3-208ENST00000561505 FAM53CQ9NYF3 392 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 DNAH1Q9P2D7 4330 aa12.75□□□□□ -0.37
CLN3-208ENST00000561505 IGHV3-43A0A0B4J1X8 118 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 SC5DO75845 299 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 CD2P06729 351 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 IGHV3-43DP0DP04 118 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 ZNF93P35789 620 aaPredicted RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 GTF2A1P52655 376 aaPredicted RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 CRIP2P52943 208 aaPredicted RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 ZNF616Q08AN1 781 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 LY6G6FQ5SQ64 297 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 XAF1Q6GPH4 301 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 TMEM106AQ96A25 262 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 MRPS24Q96EL2 167 aaKnown RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 Q96MT0 163 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 RCHY1Q96PM5 261 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 SPACA1Q9HBV2 294 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 RAB9BQ9NP90 201 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 FGF20Q9NP95 211 aaPredicted RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 ZNF107Q9UII5 783 aaPredicted RBP12.74□□□□□ -0.37
CLN3-208ENST00000561505 VSIG4Q9Y279 399 aa12.74□□□□□ -0.37
CLN3-208ENST00000561505 H3BNX3 289 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 AIPO00170 330 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 OGG1O15527 345 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 CA11O75493 328 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 ATP5HO75947 161 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 CSTBP04080 98 aaKnown RBP12.73□□□□□ -0.37
CLN3-208ENST00000561505 GLAP06280 429 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 GTF2F2P13984 249 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 SOX2P48431 317 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 GNB1P62873 340 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 ZIK1Q3SY52 487 aaPredicted RBP12.73□□□□□ -0.37
CLN3-208ENST00000561505 ZNF554Q86TJ5 538 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 LYPD6Q86Y78 171 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 ODF3L1Q8IXM7 274 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 UBALD1Q8TB05 177 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 CCDC107Q8WV48 283 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 RBMXL1Q96E39 390 aaKnown RBP12.73□□□□□ -0.37
CLN3-208ENST00000561505 FAM192AQ9GZU8 254 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 OR51J1Q9H342 316 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 AMBNQ9NP70 447 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 MBNL3Q9NUK0 354 aaKnown RBP12.73□□□□□ -0.37
CLN3-208ENST00000561505 ING4Q9UNL4 249 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 ORC6Q9Y5N6 252 aa12.73□□□□□ -0.37
CLN3-208ENST00000561505 IGHV7-81A0A0B4J1V7 117 aa12.72□□□□□ -0.37
CLN3-208ENST00000561505 TRBV5-5A0A0J9YX44 114 aa12.72□□□□□ -0.37
CLN3-208ENST00000561505 A0A1W2PP11 408 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms