RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CCL3L1P16619 93 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 RCC1P18754 421 aaPredicted RBP7.58□□□□□ -1.2
LDLR-210ENST00000559340 FPR2P25090 351 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 NFYBP25208 207 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 SRP14P37108 136 aaKnown RBP7.58□□□□□ -1.2
LDLR-210ENST00000559340 DLX6P56179 175 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 LGALS4P56470 323 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 ACTBP60709 375 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 ACTG1P63261 375 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 HLA-DRB3P79483 266 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 HTD2P86397 168 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 SSBP1Q04837 148 aaKnown RBP7.58□□□□□ -1.2
LDLR-210ENST00000559340 HMGN3Q15651 99 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 Q3ZCU0 254 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 STEAP3Q658P3 488 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 FAM131AQ6UXB0 335 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 VMO1Q7Z5L0 202 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 SNX29P2Q8IUI4 249 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 NUDCD2Q8WVJ2 157 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 S100ZQ8WXG8 99 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 DYRK2Q92630 601 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 CREB3L1Q96BA8 519 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 ST6GALNAC5Q9BVH7 336 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 TMPRSS13Q9BYE2 586 aa7.58□□□□□ -1.2
LDLR-210ENST00000559340 TRAV39A0A0B4J263 110 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 C12orf77C9JDV5 145 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 C15orf65H3BRN8 121 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 GABARAPH6UMI1 98 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 F2RL2O00254 374 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 SDCBPO00560 298 aaPredicted RBP7.57□□□□□ -1.2
LDLR-210ENST00000559340 FABP7O15540 132 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 HSPA12AO43301 675 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 HBZP02008 142 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 MMP9P14780 707 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 ZBTB25P24278 435 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 ETV6P41212 452 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 OR3A3P47888 321 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 UBE2E1P51965 193 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 TAS2R46P59540 309 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 ZNF45Q02386 682 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 C17orf58Q2M2W7 97 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 CHRFAM7AQ494W8 412 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 LY6G6FQ5SQ64 297 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 OLFML2AQ68BL7 652 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 TCF23Q7RTU1 214 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 HOGA1Q86XE5 327 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 Q8N7P7 452 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 DTX3Q8N9I9 347 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 RFESDQ8TAC1 157 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 ZNF596Q8TC21 504 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 GPX8Q8TED1 209 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 TNFRSF14Q92956 283 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 LHX4Q969G2 390 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 HDHD3Q9BSH5 251 aaPredicted RBP7.57□□□□□ -1.2
LDLR-210ENST00000559340 CLEC7AQ9BXN2 247 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 BEX2Q9BXY8 128 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 TMEM133Q9H2Q1 129 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 GSX1Q9H4S2 264 aaPredicted RBP7.57□□□□□ -1.2
LDLR-210ENST00000559340 OR2S2Q9NQN1 319 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 SIRT7Q9NRC8 400 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 TAS2R8Q9NYW2 309 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 GNG12Q9UBI6 72 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 JPT1Q9UK76 154 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 CDC42EP3Q9UKI2 254 aa7.57□□□□□ -1.2
LDLR-210ENST00000559340 A0A087X0M5 115 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 A0A1B0GX30 115 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 YPEL1O60688 119 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 GSTT2BP0CG30 244 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 IL3RAP26951 378 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 CD34P28906 385 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 RCVRNP35243 200 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 SSTR5P35346 364 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 ARPC4P59998 168 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 KRTAP1-1Q07627 177 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 ACTBL2Q562R1 376 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 PYDC2Q56P42 97 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 FAM120AOSQ5T036 256 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 PRAMEF5Q5TYX0 476 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 CCDC190Q86UF4 302 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 ABHD12Q8N2K0 398 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 PNKDQ8N490 385 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 PRR18Q8N4B5 295 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 C11orf42Q8N5U0 333 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 BEST4Q8NFU0 473 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 OR9G1Q8NH87 305 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 OR1L1Q8NH94 360 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 OR10J5Q8NHC4 309 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 FAM216AQ8WUB2 273 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 IL1F10Q8WWZ1 152 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 EDARADDQ8WWZ3 215 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 KIRREL1Q96J84 757 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 YPEL2Q96QA6 119 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 TBX15Q96SF7 602 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 SOSTQ9BQB4 213 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 GINS4Q9BRT9 223 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 SUCNR1Q9BXA5 334 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 MS4A7Q9GZW8 240 aaPredicted RBP7.56□□□□□ -1.2
LDLR-210ENST00000559340 GHITMQ9H3K2 345 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 GFOD1Q9NXC2 390 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 ZNF107Q9UII5 783 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms