RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 BAP18Q8IXM2 172 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 HIST3H2BBQ8N257 126 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 C10orf111Q8N326 155 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF664Q8N3J9 261 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC18Q8N456 261 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC52Q8N7C0 313 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF709Q8N972 641 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM104Q8NE00 496 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CCDC54Q8NEL0 328 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR2L3Q8NG85 312 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR8J2Q8NGG1 315 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR10D4PQ8NGN7 298 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR6N1Q8NGY5 312 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 NEK7Q8TDX7 302 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CA5BP1Q8WTZ4 195 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FAM151AQ8WW52 585 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 GEMIN6Q8WXD5 167 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CMBLQ96DG6 245 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 PIK3IP1Q96FE7 263 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 AKR1E2Q96JD6 320 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 VSTM2LQ96N03 204 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 PANX1Q96RD7 426 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TAAR1Q96RJ0 339 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 NPY6RQ99463 290 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ACBD6Q9BR61 282 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 MRPL45Q9BRJ2 306 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF649Q9BS31 505 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 DDA1Q9BW61 102 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SNHG12Q9BXW3 62 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CHIAQ9BZP6 476 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FXYD6Q9H0Q3 95 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 POLR2J3Q9H1A7 115 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 POLR3FQ9H1D9 316 aaPredicted RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SLC25A51Q9H1U9 297 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RHOFQ9HBH0 211 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LRTM1Q9HBL6 345 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TREM1Q9NP99 234 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 IL26Q9NPH9 171 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 PARP11Q9NR21 331 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 NRBP2Q9NSY0 501 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 C1orf123Q9NWV4 160 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R8Q9NYW2 309 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 DOK5Q9P104 306 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SLC22A14Q9Y267 594 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RASD1Q9Y272 281 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 WIF1Q9Y5W5 379 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FBN1P35555 2871 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 STRCP1A6NGW2 1772 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SIP14410 1827 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 XIRP1Q702N8 1843 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 DOCK1Q14185 1865 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 A0A0G2JMZ2 1700 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC37A2A6NM11 1700 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC37AA6NMS7 1700 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 ABCA3Q99758 1704 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 MICAL3Q7RTP6 2002 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 PPIAL4CA0A0B4J2A2 164 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SLC5A10A0PJK1 596 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SMCO3A2RU48 225 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 C7orf77A4D0Y5 90 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 OR5H14A6NHG9 310 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 C9J4A7 227 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 E7EQ34 232 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 J3QRE1 110 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SULT2B1O00204 365 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 MANBAO00462 879 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 GOSR2O14653 212 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 DNAJB6O75190 326 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 ADAP1O75689 374 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 YIF1AO95070 293 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 AHSA1O95433 338 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 PMP2P02689 132 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 IFNW1P05000 195 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 HLA-DQB2P05538 268 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 MRPL3P09001 348 aaKnown RBP2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SFTA3P0C7M3 94 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 PPIAL4GP0DN37 164 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 HNF1AP20823 631 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 NT5EP21589 574 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 DRD5P21918 477 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 G0S2P27469 103 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 TEAD1P28347 426 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 CCR1P32246 355 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 CD80P33681 288 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 OR1G1P47890 313 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SULT1A2P50226 295 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 STC1P52823 247 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 CAV3P56539 151 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 CLDN12P56749 244 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 KLF3P57682 345 aaPredicted RBP2.09□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R19P59542 299 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 PRPS1P60891 318 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 STXBP1P61764 594 aaKnown RBP2.09□□□□□ -2.07
VPS13C-208ENST00000559119 ARF6P62330 175 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SELENOTP62341 195 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 RPL38P63173 70 aaKnown RBP2.09□□□□□ -2.07
VPS13C-208ENST00000559119 MRPS6P82932 125 aaKnown RBP2.09□□□□□ -2.07
VPS13C-208ENST00000559119 CDK6Q00534 326 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 REEP5Q00765 189 aa2.09□□□□□ -2.07
VPS13C-208ENST00000559119 SLC5A12Q1EHB4 618 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms