RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HNF1AP20823 631 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 GNB2P62879 340 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 ENDOGQ14249 297 aaKnown RBP9.38□□□□□ -0.91
USP3-206ENST00000558157 ADIRFQ15847 76 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 CPEB2Q7Z5Q1 589 aaKnown RBP9.38□□□□□ -0.91
USP3-206ENST00000558157 LINC00346Q8IVM7 164 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 GATSQ8NAP1 163 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 CT55Q8WUE5 264 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 PCGF1Q9BSM1 259 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 SPRY4Q9C004 299 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 SERINC1Q9NRX5 453 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 B3GAT1Q9P2W7 334 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 CHTOPQ9Y3Y2 248 aaKnown RBP9.38□□□□□ -0.91
USP3-206ENST00000558157 GVINP1Q7Z2Y8 2422 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 RIF1Q5UIP0 2472 aaKnown RBP9.38□□□□□ -0.91
USP3-206ENST00000558157 A0A1W2PP11 408 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 CLEC18AA5D8T8 446 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 DLL1O00548 723 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TM4SF5O14894 197 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 NPIPB7O75200 414 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 MMP23AO75900 390 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TNFSF15O95150 251 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 IFNA5P01569 189 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 CD55P08174 381 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 CYC1P08574 325 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TCN2P20062 427 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TUBG1P23258 451 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 DAP3P51398 398 aaKnown RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 PTTG1IPP53801 180 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 ERVS71-1P61550 626 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 MPV17LQ2QL34 196 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TMEM164Q5U3C3 297 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 CLEC18CQ8NCF0 446 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 NFAM1Q8NET5 270 aaPredicted RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 SVIPQ8NHG7 77 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 OR51E1Q8TCB6 317 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 SPACA5Q96QH8 159 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 PSMG3Q9BT73 122 aaPredicted RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 VAMP8Q9BV40 100 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 NXF5Q9H1B4 397 aaKnown RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 GLRX2Q9NS18 164 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 C19orf25Q9UFG5 118 aaPredicted RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 RFNGQ9Y644 331 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 IGKV1D-8A0A087WSZ0 117 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 ATXN7O15265 892 aaPredicted RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 HCRTR2O43614 444 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 UCP1P25874 307 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 FOLR3P41439 243 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 ASCL1P50553 236 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 RPS18P62269 152 aaKnown RBP9.37□□□□□ -0.91
USP3-206ENST00000558157 ATP6V1FQ16864 119 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 TPTE2P1Q5T6R2 138 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 DOK3Q7L591 496 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 OR2Y1Q8NGV0 311 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 ADIPOR1Q96A54 375 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 REEP6Q96HR9 211 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 WWTR1Q9GZV5 400 aa9.37□□□□□ -0.91
USP3-206ENST00000558157 PTPRBP23467 1997 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 FRG2CA6NGY1 282 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 VENTXO95231 258 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TOMM40O96008 361 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 ESDP10768 282 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TPPP2P59282 170 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 RPL23P62829 140 aaKnown RBP9.36□□□□□ -0.91
USP3-206ENST00000558157 ZP4Q12836 540 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TOMM20LQ6UXN7 152 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 OR4B1Q8NGF8 309 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 OR10S1Q8NGN2 331 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TOMM40LQ969M1 308 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 SDSLQ96GA7 329 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 REPIN1Q9BWE0 567 aaKnown RBP9.36□□□□□ -0.91
USP3-206ENST00000558157 ZNF665Q9H7R5 613 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 PLEKHJ1Q9NW61 149 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 MCTS1Q9ULC4 181 aaKnown RBP9.36□□□□□ -0.91
USP3-206ENST00000558157 PIGBOS1A0A0B4J2F0 54 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 PHF1O43189 567 aaPredicted RBP9.36□□□□□ -0.91
USP3-206ENST00000558157 NXPH2O95156 264 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 UTS2O95399 124 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 NPBWR2P48146 333 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 SERF2P84101 59 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 UBE2V1Q13404 147 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 PCOLCEQ15113 449 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 KISS1Q15726 138 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 HLA-DQA1Q5Y7H0 255 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 POMZP3Q6PJE2 187 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 RNF144BQ7Z419 303 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 PRR22Q8IZ63 422 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 ASB10Q8WXI3 467 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TMEM56Q96MV1 263 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 KCNK17Q96T54 332 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 PLSCR2Q9NRY7 297 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 TMEM56-RWDD3S4R434 201 aa9.36□□□□□ -0.91
USP3-206ENST00000558157 LOC102723996A0A087X1L8 192 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 ZNF850A8MQ14 1090 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 CEBPZOSA8MTT3 80 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 SSSCA1O60232 199 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 HLA-HP01893 362 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 GP1BBP13224 206 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 CD99P14209 185 aa9.35□□□□□ -0.91
USP3-206ENST00000558157 PGCP20142 388 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms