RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 DIRC3C9JPN6 131 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 ST8SIA5O15466 376 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 NDUFA2O43678 99 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 PDE6DO43924 150 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 AGFG2O95081 481 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 VAMP5O95183 116 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SOD3P08294 240 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 HLA-GP17693 338 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 KIR2DL1P43626 348 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 OR3A1P47881 315 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SELENOVP59797 346 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SLC25A47Q6Q0C1 308 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 GATAD1Q8WUU5 269 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 MVB12AQ96EY5 273 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SLC35E1Q96K37 410 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 S1PR3Q99500 378 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 GNB4Q9HAV0 340 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV3OR15-7A0A075B7D8 119 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 A0A1B0GU03 582 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 NGFP01138 241 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SRP19P09132 144 aaKnown RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 OR4A8P0C604 315 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SLC35B1P78383 322 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 TMEM211Q6ICI0 200 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 H1FOOQ8IZA3 346 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 KLHDC1Q8N7A1 406 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 OR4P4Q8NGL7 312 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 APOBEC3DQ96AK3 386 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 CTHRC1Q96CG8 243 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 LYZL4Q96KX0 146 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SRXN1Q9BYN0 137 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 BARX1Q9HBU1 254 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 RAB9BQ9NP90 201 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 DUSP13Q9UII6 198 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 PTPRDP23468 1912 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 A0A1W2PQF6 199 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 M0R1X1 148 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 CBR3O75828 277 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 HOXA6P31267 233 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 RAB7AP51149 207 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 CCL20P78556 96 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 SCGB2A2Q13296 93 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 OR5I1Q13606 314 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF506Q5JVG8 444 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 RNF144BQ7Z419 303 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 OR52L2PQ8NGH6 319 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 DTD1Q8TEA8 209 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 MOB3AQ96BX8 217 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 R3HDM4Q96D70 268 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 MRPL18Q9H0U6 180 aaKnown RBP4.32□□□□□ -1.72
SYNE2-223ENST00000557005 DECR2Q9NUI1 292 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF835Q9Y2P0 537 aa4.32□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV1OR21-1A0A087WYE8 117 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 SNURFLB1AK76 121 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 H0Y980 276 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CER1O95813 267 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 HAND1O96004 215 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CTAG1AP78358 180 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 RTL8BQ17RB0 113 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TIGITQ495A1 244 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 FDX2Q6P4F2 183 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 RPS19BP1Q86WX3 136 aaKnown RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 ATOH7Q8N100 152 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 OR5D13Q8NGL4 314 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 OR10G8Q8NGN5 311 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TMEM38BQ9NVV0 291 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 KIAA1456Q9P272 454 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 PCOLCE2Q9UKZ9 415 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 POLDIP2Q9Y2S7 368 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 OR2W1Q9Y3N9 320 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 PLXNB3Q9ULL4 1909 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 NKX6-3A6NJ46 265 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CCL3P10147 92 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CD46P15529 392 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TNFSF4P23510 183 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TAS2R45P59539 299 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 PAX5Q02548 391 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 SPINK14Q6IE38 97 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF784Q8NCA9 323 aaPredicted RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TMEM54Q969K7 222 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 Q96M66 194 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 GPR35Q9HC97 309 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 HIF1ANQ9NWT6 349 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TREM2Q9NZC2 230 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 MICAL3Q7RTP6 2002 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV1OR15-9A0A0B4J2B8 117 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 LAMTOR5O43504 91 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 NDUFB4O95168 129 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 SLC25A5P05141 298 aaKnown RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV4-34P06331 123 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 CCL11P51671 97 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TFF3Q07654 80 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 Q56UQ5 140 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 TMEM252Q8N6L7 170 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 NUDT16L1Q9BRJ7 211 aaKnown RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 VSIRQ9H7M9 311 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 MYOZ1Q9NP98 299 aaPredicted RBP4.31□□□□□ -1.72
SYNE2-223ENST00000557005 BET1LQ9NYM9 111 aa4.31□□□□□ -1.72
SYNE2-223ENST00000557005 SSUH2Q9Y2M2 353 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms