RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 VWCEQ96DN2 955 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 ABHD17AQ96GS6 310 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 KCNS1Q96KK3 526 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 NPFFR1Q9GZQ6 430 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 SS18L2Q9UHA2 77 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 TNFRSF18Q9Y5U5 241 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 DOCK8Q8NF50 2099 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 A0A0A6YYD4 124 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 LAMTOR5O43504 91 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 TNFSF12O43508 249 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF728P0DKX0 622 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 RPS27P42677 84 aaKnown RBP11.88□□□□□ -0.51
SHMT2-226ENST00000556825 RHOBP62745 196 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 RAB30Q15771 203 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 MEP1BQ16820 701 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 SP6Q3SY56 376 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF788Q6ZQV5 615 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 OR10G3Q8NGC4 313 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 CFHR5Q9BXR6 569 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 LINC00470Q9BZP3 86 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 A0A1W2PS18 150 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 FAM231BA6NCW3 169 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 C1QTNF9BB2RNN3 333 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 K7EP34 96 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 SLC33A1O00400 549 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 MLNRO43193 412 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 PDE6DO43924 150 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CELA3BP08861 270 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CORO1AP31146 461 aaKnown RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 NPBWR2P48146 333 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 THBS3P49746 956 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 HLA-DRB5Q30154 266 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 MFSD12Q6NUT3 480 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 LIAT1Q6ZQX7 453 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 LINC00346Q8IVM7 164 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 MRPL30Q8TCC3 161 aaKnown RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 GPX7Q96SL4 187 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 RNF208Q9H0X6 261 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 NAA60Q9H7X0 242 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 JPT1Q9UK76 154 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 HHLA2Q9UM44 414 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 HCFC2Q9Y5Z7 792 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 A0A1W2PR80 420 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 SOCS1O15524 211 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 GPR75O95800 540 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CA2P00918 260 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CBLN1P23435 193 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 ARFRP1Q13795 201 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CEACAM21Q3KPI0 293 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 LINC00114Q6XXX2 140 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 CPEB2Q7Z5Q1 589 aaKnown RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 ODF3L1Q8IXM7 274 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 SLC22A24Q8N4F4 322 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 SGMS2Q8NHU3 365 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 OTOSQ8NHW6 89 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 KCNG3Q8TAE7 436 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 BORCS7Q96B45 105 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 ZC2HC1AQ96GY0 325 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 HINT2Q9BX68 163 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 FNDC4Q9H6D8 234 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-226ENST00000556825 GNB4Q9HAV0 340 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 DECR2Q9NUI1 292 aa11.87□□□□□ -0.51
SHMT2-226ENST00000556825 EDDM13A0A1B0GTR0 161 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 LINC00869P0C866 280 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PMCHP20382 165 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PMP22Q01453 160 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PRTGQ2VWP7 1150 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 INO80CQ6PI98 192 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-226ENST00000556825 ASCL4Q6XD76 172 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 RD3Q7Z3Z2 195 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 HAPLN4Q86UW8 402 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 OR4A5Q8NH83 315 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 NINJ1Q92982 152 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 KLHDC7BQ96G42 594 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PECRQ9BY49 303 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 DAPP1Q9UN19 280 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 ARID1AO14497 2285 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-226ENST00000556825 A0A1B0GW15 77 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF324O75467 553 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-226ENST00000556825 CST7O76096 145 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 SSR2P43308 183 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 SPINT3P49223 89 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 TMEM50BP56557 158 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PIGPP57054 158 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 SSBP2P81877 361 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-226ENST00000556825 ABHD17CQ6PCB6 329 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 SUSD3Q96L08 255 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 SPATA25Q9BR10 227 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 CLEC7AQ9BXN2 247 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 CD207Q9UJ71 328 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 B9D1Q9UPM9 204 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PSG8Q9UQ74 426 aa11.86□□□□□ -0.51
SHMT2-226ENST00000556825 PLXNA2O75051 1894 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 LOC102725191A0A1B0GVB3 256 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 C7orf71A4D174 169 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 TMEM189A5PLL7 270 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF17P17021 662 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 GATA2P23769 480 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-226ENST00000556825 PSMB3P49720 205 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms