RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LY6G6EA0A0G2JKS1 128 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 HNF1AP20823 631 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 PPP1CCP36873 323 aaKnown RBP12.78□□□□□ -0.36
CUX1-215ENST00000556210 ZNF83P51522 516 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 SRPXP78539 464 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 OR2Z1Q8NG97 314 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 TMEM54Q969K7 222 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 GAB2Q9UQC2 676 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 U3KQA8 63 aa12.78□□□□□ -0.36
CUX1-215ENST00000556210 UBE2L5PA0A1B0GUS4 154 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 SH2D1BO14796 132 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 SCAF4O95104 1147 aaKnown RBP12.77□□□□□ -0.36
CUX1-215ENST00000556210 OPN1MWP04001 364 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 HEXAP06865 529 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 FBP1P09467 338 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 FAM157CP0CG43 387 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 OPN1MW2P0DN77 364 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 OPN1MW3P0DN78 364 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 HOXA4Q00056 320 aaPredicted RBP12.77□□□□□ -0.36
CUX1-215ENST00000556210 EWSR1Q01844 656 aaKnown RBP eCLIP12.77□□□□□ -0.362e-6■■■□□ 16.9
CUX1-215ENST00000556210 TRIP6Q15654 476 aaKnown RBP12.77□□□□□ -0.36
CUX1-215ENST00000556210 C10orf128Q5T292 105 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 TMED3Q9Y3Q3 217 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 USF3Q68DE3 2245 aa12.77□□□□□ -0.36
CUX1-215ENST00000556210 PROB1E7EW31 1015 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 SPRY3O43610 288 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 CLN5O75503 358 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 DEDDO75618 318 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 HBE1P02100 147 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 AESQ08117 197 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 PRAMEF6Q5VXH4 476 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 ZNF385CQ66K41 422 aaPredicted RBP12.77□□□□□ -0.37
CUX1-215ENST00000556210 NABP1Q96AH0 204 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 HS3ST6Q96QI5 342 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 CACFD1Q9UGQ2 172 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 A0A1W2PPE3 182 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 RBFOX3A6NFN3 312 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 SEC11BP0C7V7 166 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 MPV17LQ2QL34 196 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 TMEM100Q9NV29 134 aa12.77□□□□□ -0.37
CUX1-215ENST00000556210 M0R1B8 84 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 GAPDHP04406 335 aaKnown RBP12.76□□□□□ -0.37
CUX1-215ENST00000556210 SP1P08047 785 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 PPP1CBP62140 327 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 SURF2Q15527 256 aaPredicted RBP12.76□□□□□ -0.37
CUX1-215ENST00000556210 SLC25A40Q8TBP6 338 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 ADGRG7Q96K78 797 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 LURAP1Q96LR2 239 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 HEYLQ9NQ87 328 aaPredicted RBP12.76□□□□□ -0.37
CUX1-215ENST00000556210 OR1A1Q9P1Q5 309 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 MDKP21741 143 aaPredicted RBP12.76□□□□□ -0.37
CUX1-215ENST00000556210 ATP6V0CP27449 155 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 SNCAP37840 140 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 QRFPP83859 136 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 ZNF818PQ6ZRF7 136 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 C1orf87Q8N0U7 546 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 TVP23CQ96ET8 276 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 RARRES2Q99969 163 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 CLEC18AA5D8T8 446 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 CRYM-AS1A6NIL9 109 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 H3BQ15 152 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 IFNA1P01562 189 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 SLC25A53Q5H9E4 307 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 CLEC18CQ8NCF0 446 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 FRZBQ92765 325 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 ENY2Q9NPA8 101 aa12.76□□□□□ -0.37
CUX1-215ENST00000556210 COL6A3P12111 3177 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 C9JQL5 133 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 M0R296 226 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 ATXN7O15265 892 aaPredicted RBP12.75□□□□□ -0.37
CUX1-215ENST00000556210 CELA3BP08861 270 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 RSG1Q9BU20 258 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 ABHD14AQ9BUJ0 271 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 OR2D2Q9H210 308 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 METTL1Q9UBP6 276 aaKnown RBP12.75□□□□□ -0.37
CUX1-215ENST00000556210 PSG11Q9UQ72 335 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 C9orf172C9J069 976 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 HOXB1P14653 301 aaPredicted RBP12.75□□□□□ -0.37
CUX1-215ENST00000556210 P2RY1P47900 373 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 UBE2G2P60604 165 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 DTX1Q86Y01 620 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 LHX4Q969G2 390 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 CABLES2Q9BTV7 478 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 GCM1Q9NP62 436 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 TECTAO75443 2155 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 H3F3AP84243 136 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 OR8B8Q15620 311 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 BTNL8Q6UX41 500 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 MUCL1Q96DR8 90 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 AURKAIP1Q9NWT8 199 aaPredicted RBP12.75□□□□□ -0.37
CUX1-215ENST00000556210 POLDIP2Q9Y2S7 368 aa12.75□□□□□ -0.37
CUX1-215ENST00000556210 LRRC3CA6NJW4 275 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 ZNF716A6NP11 495 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 V9GYS6 101 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 HBG1P69891 147 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 HBG2P69892 147 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 DLK1P80370 383 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 SRSF4Q08170 494 aaKnown RBP12.74□□□□□ -0.37
CUX1-215ENST00000556210 MST1LQ2TV78 715 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 H2BFWTQ7Z2G1 175 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms