RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 FAM210AQ96ND0 272 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 SERPINB11Q96P15 392 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 PRSS27Q9BQR3 290 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 NXF2Q9GZY0 626 aaKnown RBP0.8□□□□□ -2.28
SCFD1-216ENST00000555550 TREM1Q9NP99 234 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 FBXL3Q9UKT7 428 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 GMEB1Q9Y692 573 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 IGHV1-45A0A0A0MS14 117 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 GOLGA8QA0A0J9YX86 632 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 TMEM213A2RRL7 107 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 RBFOX3A6NFN3 312 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 PDCD6O75340 191 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 CCDC172P0C7W6 258 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 CECR9P0C854 216 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 NUP62P37198 522 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-216ENST00000555550 ZCWPW2Q504Y3 356 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 FAM162BQ5T6X4 162 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 CYP4Z1Q86W10 505 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 ACBD4Q8NC06 268 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 OR51Q1Q8NH59 317 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 ANGPTL6Q8NI99 470 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 CMBLQ96DG6 245 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 FMC1Q96HJ9 113 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 SUCNR1Q9BXA5 334 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 GNB1LQ9BYB4 327 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 CHST5Q9GZS9 411 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 GOLPH3Q9H4A6 298 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 WDR55Q9H6Y2 383 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-216ENST00000555550 WDR54Q9H977 334 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 LZTFL1Q9NQ48 299 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 IMP3Q9NV31 184 aaKnown RBP0.79□□□□□ -2.28
SCFD1-216ENST00000555550 SDHAF2Q9NX18 166 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 RPUSD1Q9UJJ7 312 aaKnown RBP0.79□□□□□ -2.28
SCFD1-216ENST00000555550 STK38LQ9Y2H1 464 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 PHLDA3Q9Y5J5 127 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 MTCH2Q9Y6C9 303 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 FSIP2Q5CZC0 6907 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 RGS12O14924 1447 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 MDC1Q14676 2089 aaKnown RBP0.79□□□□□ -2.28
SCFD1-216ENST00000555550 SLIT2O94813 1529 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 SDK1Q7Z5N4 2213 aa0.79□□□□□ -2.28
SCFD1-216ENST00000555550 COL18A1P39060 1754 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 TRPM6Q9BX84 2022 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 LOC102725191A0A1B0GVB3 256 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 SLC25A20O43772 301 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 MYO1DO94832 1006 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 NAPSAO96009 420 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 APOA1P02647 267 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 TPM1P09493 284 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 ZNF7P17097 686 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-216ENST00000555550 RPL14P50914 215 aaKnown RBP0.78□□□□□ -2.28
SCFD1-216ENST00000555550 RAB25P57735 213 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 STK38Q15208 465 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 ACTBL2Q562R1 376 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 OR10J3Q5JRS4 329 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 NXNL2Q5VZ03 156 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 FAM183BPQ6ZVS7 135 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 AHSA2Q719I0 299 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 FAM19A3Q7Z5A8 133 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 MRPL52Q86TS9 123 aaKnown RBP0.78□□□□□ -2.28
SCFD1-216ENST00000555550 OR4K17Q8NGC6 315 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 LRRC20Q8TCA0 184 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 DNAJB3Q8WWF6 145 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 CAPZA3Q96KX2 299 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 CFAP53Q96M91 514 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 CFAP45Q9UL16 551 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 LINC00588Q9Y4M8 146 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 TBL2Q9Y4P3 447 aaKnown RBP0.78□□□□□ -2.28
SCFD1-216ENST00000555550 USH1CQ9Y6N9 552 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 MALRD1Q5VYJ5 2156 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 CRB1P82279 1406 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 PXDNLA1KZ92 1463 aa0.78□□□□□ -2.28
SCFD1-216ENST00000555550 CACNA1SQ13698 1873 aa0.78□□□□□ -2.29
SCFD1-216ENST00000555550 YLPM1P49750 1951 aaKnown RBP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 IGKV1-12A0A0C4DH73 117 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 SMLR1H3BR10 107 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 GOLGA8RI6L899 631 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 IGKV1D-12P01611 117 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 LIMS3P0CW19 117 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 LIMS4P0CW20 117 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 SPAM1P38567 509 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 TNNC1P63316 161 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 FAM3AP98173 230 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 OR4D1Q15615 310 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 C4orf26Q17RF5 130 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 BSXQ3C1V8 233 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 OR7G1Q8NGA0 311 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 OR4X1Q8NH49 305 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 SUN5Q8TC36 379 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 FAM45AQ8TCE6 357 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 RNASEH2CQ8TDP1 164 aaKnown RBP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 GTF2H4Q92759 462 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 OLFM3Q96PB7 478 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 LINC01587Q99440 93 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 CIB1Q99828 191 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 LLPHQ9BRT6 129 aaKnown RBP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 BBS2Q9BXC9 721 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 BCL2L14Q9BZR8 327 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 OR51E2Q9H255 320 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 METTL8Q9H825 291 aaKnown RBP0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms