RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 A0A1W2PPI3 338 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM14DPA8MWL7 114 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 C12orf77C9JDV5 145 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 AIPO00170 330 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 PDCD6O75340 191 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 CA11O75493 328 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 TNFAIP8O95379 198 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 MPIG6BO95866 241 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 AMY1AP04745 511 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 AMY2AP04746 511 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 PSMA1P25786 263 aaKnown RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 HTR2CP28335 458 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 GNG10P50151 68 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 RPS27AP62979 156 aaKnown RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 FABP5Q01469 135 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 UNC119Q13432 240 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 TRAM1Q15629 374 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 TBCEQ15813 527 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 SSX1Q16384 188 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 SYT6Q5T7P8 510 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 HIST2H2BDQ6DRA6 164 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 CCDC144NLQ6NUI1 221 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 C16orf82Q7Z2V1 217 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 THNSL2Q86YJ6 484 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 LINC00311Q8N616 119 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 C8orf31Q8N9H6 132 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 OR4K15Q8NH41 348 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 RPEQ96AT9 228 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 RBM14Q96PK6 669 aaKnown RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 OCSTAMPQ9BR26 566 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 MRPS26Q9BYN8 205 aaKnown RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 PRSS22Q9GZN4 317 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 CST11Q9H112 138 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 KCNK15Q9H427 330 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 LIN7BQ9HAP6 207 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 ACOT13Q9NPJ3 140 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 GFOD1Q9NXC2 390 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 ETAA1Q9NY74 926 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 AMMECR1Q9Y4X0 333 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 A0A0A6YYD4 124 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 UBE2QL1A1L167 161 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 SDCBPO00560 298 aaPredicted RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 OR2F2O95006 317 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 TSPAN15O95858 294 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 SMIM18P0DKX4 95 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 VSIG10L2P0DP72 767 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 RCC1P18754 421 aaPredicted RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 CHATP28329 748 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 MNDAP41218 407 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 ARHGDIBP52566 201 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 EMX1Q04741 257 aaPredicted RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 MADCAM1Q13477 382 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF367Q7RTV3 350 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 C5orf24Q7Z6I8 188 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF439Q8NDP4 499 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 OR6M1Q8NGM8 313 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 OR1L1Q8NH94 360 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 KCNG3Q8TAE7 436 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 MRPL30Q8TCC3 161 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 TOMM40LQ969M1 308 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 SULT4A1Q9BR01 284 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 TM2D1Q9BX74 207 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 MMP27Q9H306 513 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 MBNL3Q9NUK0 354 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 TRAPPC2LQ9UL33 140 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 BLOC1S6Q9UL45 172 aa8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 AK6Q9Y3D8 172 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-206ENST00000553437 IGHV3-43A0A0B4J1X8 118 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 H3BUI4 141 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 SLC17A2O00624 439 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 SLC31A2O15432 143 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 MRPS14O60783 128 aaKnown RBP8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 ARL6IP5O75915 188 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 BPNT1O95861 308 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 HBZP02008 142 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 FAM106CPP0CH98 169 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 IGHV3-43DP0DP04 118 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 RAB7AP51149 207 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF134P52741 427 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF816Q0VGE8 651 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM95Q3KNT9 176 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 Q3ZCU0 254 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 NKAPLQ5M9Q1 402 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 C6orf183Q5T699 404 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 FOXB2Q5VYV0 432 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 CD200R1LQ6Q8B3 271 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 Q6ZPA2 131 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 Q6ZTK2 550 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 OR8H3Q8N146 312 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 FAM89BQ8N5H3 189 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 DRAM1Q8N682 238 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 C11orf44Q8N8P7 122 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 OR10X1Q8NGY0 326 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 OR56B4Q8NH76 319 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 CAPSLQ8WWF8 208 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 ST6GALNAC6Q969X2 333 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 NICN1Q9BSH3 213 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 SLC25A33Q9BSK2 321 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 FAAP24Q9BTP7 215 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM59Q9BXS4 323 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms