RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ITLN1Q8WWA0 313 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 COQ2Q96H96 371 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 ARPC5LQ9BPX5 153 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 KIF25Q9UIL4 384 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 ZDHHC8Q9ULC8 765 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 ATRXP46100 2492 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 PSG2P11465 335 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 S100A10P60903 97 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 HOXA4Q00056 320 aaPredicted RBP22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 LY6DQ14210 128 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 TESK1Q15569 626 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 MOGAT3Q86VF5 341 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 GCSAMQ8N6F7 178 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 CD177Q8N6Q3 437 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 ST6GALNAC3Q8NDV1 305 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 OR1S1Q8NH92 325 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 ST8SIA2Q92186 375 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 AQP10Q96PS8 301 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 IL19Q9UHD0 177 aa22.1■■□□□ 1.13
CCDC88C-205ENST00000553403 DUXBA0A1W2PPF3 345 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 HSPA12AO43301 675 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 PGLYRP1O75594 196 aaPredicted RBP22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 LHBP01229 141 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 TNFSF4P23510 183 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 UCP1P25874 307 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 CA7P43166 264 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 AESQ08117 197 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 SMCO1Q147U7 214 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 BEX5Q5H9J7 111 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 C6orf183Q5T699 404 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 RRNAD1Q96FB5 475 aaKnown RBP22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 AKR1E2Q96JD6 320 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 ZFP57Q9NU63 452 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 METRNQ9UJH8 293 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 AUP1Q9Y679 476 aa22.09■■□□□ 1.13
CCDC88C-205ENST00000553403 H0Y980 276 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 ABCD4O14678 606 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 IGHV1-46P01743 117 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 RLN2P04090 185 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 SPRNQ5BIV9 151 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 TMEM268Q5VZI3 342 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 PRR18Q8N4B5 295 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 ERGIC1Q969X5 290 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 SHARPINQ9H0F6 387 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 NGBQ9NPG2 151 aa22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 PRRC2CQ9Y520 2896 aaKnown RBP22.08■■□□□ 1.13
CCDC88C-205ENST00000553403 SPDEFO95238 335 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 TNFAIP6P98066 277 aaPredicted RBP22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 BSPH1Q075Z2 132 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 KRBOX4Q5JUW0 171 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 TRAT1Q6PIZ9 186 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ALKAL2Q6UX46 152 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 MEX3BQ6ZN04 569 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ZNF695Q8IW36 515 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 SLC35G3Q8N808 338 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 PPP1R35Q8TAP8 253 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 IL22RA2Q969J5 263 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 LURAP1Q96LR2 239 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 TOLLIPQ9H0E2 274 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 PIGBOS1A0A0B4J2F0 54 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ANKRD34BA5PLL1 514 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 C12orf77C9JDV5 145 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ZNF737O75373 536 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 DEDDO75618 318 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 CDS2O95674 445 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ASCL1P50553 236 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 SELENOHQ8IZQ5 122 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 OR5D13Q8NGL4 314 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 GALMQ96C23 342 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 SNX22Q96L94 193 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 ZNF471Q9BX82 626 aaPredicted RBP22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 DNTTIP1Q9H147 329 aa22.07■■□□□ 1.12
CCDC88C-205ENST00000553403 IGKV1D-17A0A075B6S4 117 aa22.06■■□□□ 1.12
CCDC88C-205ENST00000553403 CEACAM6P40199 344 aa22.06■■□□□ 1.12
CCDC88C-205ENST00000553403 GABRA2P47869 451 aa22.06■■□□□ 1.12
CCDC88C-205ENST00000553403 DIRC2Q96SL1 478 aa22.06■■□□□ 1.12
CCDC88C-205ENST00000553403 F5H0A9 414 aaPredicted RBP22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 TFF1P04155 84 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 F2RP25116 425 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 ZNF843Q8N446 348 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 OR1L1Q8NH94 360 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 Q8TCH9 128 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 PHYHIPLQ96FC7 376 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 WFIKKN1Q96NZ8 548 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 RNF7Q9UBF6 113 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 ATMQ13315 3056 aa22.05■■□□□ 1.12
CCDC88C-205ENST00000553403 ADH4P08319 380 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 IL2RGP31785 369 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 ADIPOQQ15848 244 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 BOLLQ8N9W6 283 aaKnown RBP22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 FAM222BQ8WU58 562 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 SPIN2AQ99865 258 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 SPIN2BQ9BPZ2 258 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 SMG1Q96Q15 3661 aaKnown RBP22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 CHD3Q12873 2000 aaKnown RBP22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 LEUTXA8MZ59 168 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 KCNAB3O43448 404 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 C1QL1O75973 258 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 HBZP02008 142 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 MBPP02686 304 aaPredicted RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms