RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KCNIP1Q9NZI2 227 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 SLC23A1Q9UHI7 598 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF230Q9UIE0 474 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-211ENST00000552338 KPTNQ9Y664 436 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 BAHCC1Q9P281 2608 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 IGHV2-70DA0A0C4DH43 119 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 IGKV1-6A0A0C4DH72 117 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 NAP1L6A6NFF2 107 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF736B4DX44 427 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-211ENST00000552338 J3QRK9 145 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 SPINT2O43291 252 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 ENSAO43768 121 aaKnown RBP7.87□□□□□ -1.15
LIMA1-211ENST00000552338 HBZP02008 142 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 SCTP09683 121 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 GSTT2P0CG29 244 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 MMP9P14780 707 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 FPR2P25090 351 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 GLP1RP43220 463 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 ASAH1Q13510 395 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 EDDM3AQ14507 147 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 MEF2DQ14814 521 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 CDK10Q15131 360 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 STEAP1BQ6NZ63 245 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 SPNS3Q6ZMD2 512 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 LHFPL1Q86WI0 220 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 TOMM5Q8N4H5 51 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 ARRDC1Q8N5I2 433 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 GHITMQ9H3K2 345 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 IFT46Q9NQC8 304 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 CALYQ9NYX4 217 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 JPT1Q9UK76 154 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 GAB2Q9UQC2 676 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 INSIG2Q9Y5U4 225 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 HECTD1Q9ULT8 2610 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 CENPEQ02224 2701 aa7.87□□□□□ -1.15
LIMA1-211ENST00000552338 TRAV20A0A0B4J274 112 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 hCG_1809904A0A1W2PP81 198 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 A0A1W2PPE2 198 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 A0A1W2PQ09 198 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 A0A1W2PR64 198 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 A0A1W2PRV1 198 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 PHF1O43189 567 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 CD3DP04234 171 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 MSMBP08118 114 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 AKAIN1P0CW23 69 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 PRTN3P24158 256 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 ZBTB25P24278 435 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 FAUP35544 74 aaKnown RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 GZMKP49863 264 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 DVL1P1P54792 670 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 UCP3P55916 312 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 DCTN2Q13561 401 aaKnown RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 MSMO1Q15800 293 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 TRIQKQ629K1 86 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 OR52W1Q6IF63 320 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 H1FOOQ8IZA3 346 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 LINC00311Q8N616 119 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 Q8N7P7 452 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 LINC01356Q8N9X3 169 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 WFDC11Q8NEX6 87 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 MRGPRDQ8TDS7 321 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 CCDC107Q8WV48 283 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 TNFRSF14Q92956 283 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 ARL11Q969Q4 196 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 KIRREL1Q96J84 757 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 SIRPDQ9H106 197 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 CHMP1AQ9HD42 196 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-211ENST00000552338 HRASLSQ9HDD0 168 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 NECAP2Q9NVZ3 263 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 GFOD1Q9NXC2 390 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 IDI2-AS1Q9NZ38 188 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 TBC1D24Q9ULP9 559 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 VPS13CQ709C8 3753 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 ABCA1O95477 2261 aa7.86□□□□□ -1.15
LIMA1-211ENST00000552338 TACC2O95359 2948 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF469Q96JG9 3925 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-211ENST00000552338 MEIS3P1A6NDR6 274 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 RNF223E7ERA6 249 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 J3QLI3 93 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 RAB3DO95716 219 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 OR5H8P0DN80 308 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 IGHV1-8P0DP01 117 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 IGHV4-31P0DP07 118 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 SLC6A1P30531 599 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 BTCP35070 178 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 SSTR5P35346 364 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 HRH1P35367 487 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 MADCAM1Q13477 382 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 TMEM249Q2WGJ8 235 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 CHRFAM7AQ494W8 412 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 MORN2Q502X0 79 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 IGSF11Q5DX21 431 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 RNASE10Q5GAN6 216 aaKnown RBP7.85□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF439Q8NDP4 499 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 DUSP18Q8NEJ0 188 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 OR4C16Q8NGL9 310 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 OR5H2Q8NGV7 314 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 H1FXQ92522 213 aaKnown RBP7.85□□□□□ -1.15
LIMA1-211ENST00000552338 COX4I2Q96KJ9 171 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 AGMATQ9BSE5 352 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms