RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ZMAT3Q9HA38 289 aaKnown RBP13.2□□□□□ -0.3
CHMP1A-209ENST00000550872 TAF9BQ9HBM6 251 aa13.2□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF286AQ9HBT8 521 aa13.2□□□□□ -0.3
CHMP1A-209ENST00000550872 MBNL3Q9NUK0 354 aaKnown RBP13.2□□□□□ -0.3
CHMP1A-209ENST00000550872 KCNK7Q9Y2U2 307 aa13.2□□□□□ -0.3
CHMP1A-209ENST00000550872 ODF3BA8MYP8 253 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 SDCBPO00560 298 aaPredicted RBP13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 MFNGO00587 321 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 TOR1AO14656 332 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 IGHV3-7P01780 117 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 HBZP02008 142 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 FBP1P09467 338 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 PRRX1P54821 245 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 SRSF2Q01130 221 aaKnown RBP13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 ARL6IP1Q15041 203 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 LHFPL4Q7Z7J7 247 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF554Q86TJ5 538 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 OR1L1Q8NH94 360 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 C17orf50Q8WW18 174 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 SLC25A38Q96DW6 304 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 BCL7BQ9BQE9 202 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 C12orf4Q9NQ89 552 aa13.19□□□□□ -0.3
CHMP1A-209ENST00000550872 A0A087X0M5 115 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 TRBV6-6A0A0A6YYG2 114 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 IGHV3-43A0A0B4J1X8 118 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 A0A1B0GX30 115 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 SERPINE3A8MV23 424 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 F2RL2O00254 374 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 IGHV3-43DP0DP04 118 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 ARFRP1Q13795 201 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 SPCS2Q15005 226 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 UTF1Q5T230 341 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF880Q6PDB4 577 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 Q6YL49 198 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 MOB1BQ7L9L4 216 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 C5orf24Q7Z6I8 188 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 SAMD12Q8N8I0 201 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 OR52M1Q8NGK5 317 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 OR9G1Q8NH87 305 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF596Q8TC21 504 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 LEAP2Q969E1 77 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 DIABLOQ9NR28 239 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 COMMD3Q9UBI1 195 aa13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 TBL2Q9Y4P3 447 aaKnown RBP13.18□□□□□ -0.3
CHMP1A-209ENST00000550872 TRAV18A0A075B6X5 111 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 MELTFP08582 738 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNF182P17025 639 aaPredicted RBP13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 TALDO1P37837 337 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 UBE2NLQ5JXB2 153 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ZDHHC22Q8N966 263 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ACOT12Q8WYK0 555 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ISOC1Q96CN7 298 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 S100A16Q96FQ6 103 aaKnown RBP13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 DUX5Q96PT3 197 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ABCG5Q9H222 651 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 Q9N2K0 584 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 ESM1Q9NQ30 184 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 GFOD1Q9NXC2 390 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 GNG12Q9UBI6 72 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 MGAT4AQ9UM21 535 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 PSG11Q9UQ72 335 aa13.17□□□□□ -0.3
CHMP1A-209ENST00000550872 A0A0A6YYH2 397 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 CCDC160A6NGH7 325 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 DNAJC9-AS1A6NH13 148 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 A6NJ64 397 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 POM121CA8CG34 1229 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 TRIM77I1YAP6 450 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 J3QR06 171 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 HOXA3O43365 443 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 GSTP1P09211 210 aaKnown RBP13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 HTR1DP28221 377 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 GNG10P50151 68 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 LOXL3P58215 753 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 HMGN3Q15651 99 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 HLA-DRB5Q30154 266 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 TMEM30BQ3MIR4 351 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 MINOS1Q5TGZ0 78 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 FAM53AQ6NSI3 398 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 MZT2AQ6P582 158 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 Q6ZPA2 131 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 LDLRAD3Q86YD5 345 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 BEND2Q8NDZ0 799 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 OR4P4Q8NGL7 312 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 AP3S1Q92572 193 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 GALMQ96C23 342 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 MALSU1Q96EH3 234 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 OR2S2Q9NQN1 319 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 TNFRSF19Q9NS68 423 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 ZNRD1Q9P1U0 126 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 DPM3Q9P2X0 92 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 ELF5Q9UKW6 265 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 CEPT1Q9Y6K0 416 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 MINOS1-NBL1R4GNA1 71 aa13.16□□□□□ -0.3
CHMP1A-209ENST00000550872 A0A1W2PPE3 182 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 TMEM235A6NFC5 223 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 H3BMQ9 156 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 IGLV1-47P01700 117 aa13.15□□□□□ -0.3
CHMP1A-209ENST00000550872 PAX6P26367 422 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms