RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RNF166Q96A37 237 aaPredicted RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 FLYWCH2Q96CP2 140 aaKnown RBP13.09□□□□□ -0.31
VPS29-204ENST00000548259 ZNF251Q9BRH9 671 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 GNG12Q9UBI6 72 aa13.09□□□□□ -0.31
VPS29-204ENST00000548259 FAM90A10PA6NDY2 464 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 A8MZ25 164 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 G3V318 75 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 ATP6V0E1O15342 81 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 HSPA12AO43301 675 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 HLA-DRB1P01911 266 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 RAB3AP20336 220 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 ZNF137PP52743 207 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 SLURP1P55000 103 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 NANOS3P60323 173 aaKnown RBP13.08□□□□□ -0.32
VPS29-204ENST00000548259 PIGYQ3MUY2 71 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 STEAP3Q658P3 488 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 LINC00596Q86U02 117 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 ANKRD13BQ86YJ7 626 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 NEK7Q8TDX7 302 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 S100A13Q99584 98 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 CST11Q9H112 138 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 IFT22Q9H7X7 185 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 PAK1IP1Q9NWT1 392 aaPredicted RBP13.08□□□□□ -0.32
VPS29-204ENST00000548259 KIAA1456Q9P272 454 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 STUB1Q9UNE7 303 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 DHDHQ9UQ10 334 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 ST3GAL6Q9Y274 331 aa13.08□□□□□ -0.32
VPS29-204ENST00000548259 C15orf65H3BRN8 121 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 J3QLW9 94 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 HTR3BO95264 441 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 ZNF19P17023 458 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 CD40LGP29965 261 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 ALKBH1Q13686 389 aaKnown RBP13.07□□□□□ -0.32
VPS29-204ENST00000548259 LPCAT4Q643R3 524 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 KDM4DQ6B0I6 523 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 FAM53AQ6NSI3 398 aaPredicted RBP13.07□□□□□ -0.32
VPS29-204ENST00000548259 PARP16Q8N5Y8 322 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 TCTEX1D1Q8N7M0 179 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 TSEN15Q8WW01 171 aaKnown RBP13.07□□□□□ -0.32
VPS29-204ENST00000548259 TOLLIPQ9H0E2 274 aa13.07□□□□□ -0.32
VPS29-204ENST00000548259 IGHV3-43A0A0B4J1X8 118 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 TCRBV3S1A0A5B6 114 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 MAGEA13PA6NCF6 341 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 OR4C45A6NMZ5 311 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 LANCL1O43813 399 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 LGALS1P09382 135 aaKnown RBP13.06□□□□□ -0.32
VPS29-204ENST00000548259 IGHV3-43DP0DP04 118 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 ACTBP60709 375 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 GNGT1P63211 74 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 TMEM267Q0VDI3 215 aaPredicted RBP13.06□□□□□ -0.32
VPS29-204ENST00000548259 LSAMPQ13449 338 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 PYHIN1Q6K0P9 492 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 LIN54Q6MZP7 749 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 OR10K1Q8NGX5 313 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 CCDC107Q8WV48 283 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 METTL9Q9H1A3 318 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 RIBC2Q9H4K1 309 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 C19orf73Q9NVV2 129 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 IMPAD1Q9NX62 359 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 RNF150Q9ULK6 438 aa13.06□□□□□ -0.32
VPS29-204ENST00000548259 FOXA2Q9Y261 457 aaPredicted RBP13.06□□□□□ -0.32
VPS29-204ENST00000548259 TMEM212A6NML5 194 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 SNTNA6NMZ2 147 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 AIPO00170 330 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 GABRPO00591 440 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 NBR2O15453 112 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 HSPB1P04792 205 aaKnown RBP13.05□□□□□ -0.32
VPS29-204ENST00000548259 ARSBP15848 533 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 RBM11P57052 281 aaKnown RBP13.05□□□□□ -0.32
VPS29-204ENST00000548259 MPV17LQ2QL34 196 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 NHLRC3Q5JS37 347 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 ATAD3CQ5T2N8 411 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 C6orf183Q5T699 404 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 ACBD7Q8N6N7 88 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 MINDY2Q8NBR6 621 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 OR52N1Q8NH53 320 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 UBALD1Q8TB05 177 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 RSRP1Q9BUV0 290 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 JAM3Q9BX67 310 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 ALX4Q9H161 411 aaPredicted RBP13.05□□□□□ -0.32
VPS29-204ENST00000548259 TUBA4BQ9H853 241 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 TRAPPC2LQ9UL33 140 aa13.05□□□□□ -0.32
VPS29-204ENST00000548259 CSMD3Q7Z407 3707 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 IGHV7-81A0A0B4J1V7 117 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 A0A1W2PN81 502 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 BLVRBP30043 206 aaPredicted RBP13.04□□□□□ -0.32
VPS29-204ENST00000548259 CHRNA7P36544 502 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 MRPL28Q13084 256 aaKnown RBP13.04□□□□□ -0.32
VPS29-204ENST00000548259 ECSCRQ19T08 205 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 C5orf64Q2M2E5 130 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 DNAL1Q4LDG9 190 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 TRAT1Q6PIZ9 186 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 Q8N1Y9 231 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 TRUB1Q8WWH5 349 aaKnown RBP13.04□□□□□ -0.32
VPS29-204ENST00000548259 PELI1Q96FA3 418 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 C4orf36Q96KX1 117 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 SPACA1Q9HBV2 294 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 ING4Q9UNL4 249 aa13.04□□□□□ -0.32
VPS29-204ENST00000548259 IGHV4OR15-8A0A075B7B6 117 aa13.03□□□□□ -0.32
VPS29-204ENST00000548259 A0A087WW49 117 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms