RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LINC01548A6NM66 108 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 SERPINE3A8MV23 424 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 ZNF561-AS1K7EIQ3 104 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 CDRT1O95170 752 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 CLIC3O95833 236 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 FADS2O95864 444 aaKnown RBP6.68□□□□□ -1.34
USP28-215ENST00000545608 SCGB1D2O95969 90 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 IGKV1D-33P01593 117 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 IGKV1-33P01594 117 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 CCDC159P0C7I6 412 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 TMEM11P17152 192 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 SSTR5P35346 364 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 THBS3P49746 956 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 RAB7AP51149 207 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 GBX2P52951 348 aaPredicted RBP6.68□□□□□ -1.34
USP28-215ENST00000545608 AQP4P55087 323 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 MRPL28Q13084 256 aaKnown RBP6.68□□□□□ -1.34
USP28-215ENST00000545608 MADCAM1Q13477 382 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 NDUFA5Q16718 116 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 XAF1Q6GPH4 301 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 FAM53AQ6NSI3 398 aaPredicted RBP6.68□□□□□ -1.34
USP28-215ENST00000545608 OR2W3Q7Z3T1 314 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 OR8H3Q8N146 312 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 PQLC1Q8N2U9 271 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 SUMF2Q8NBJ7 301 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 TSPAN14Q8NG11 270 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 HAVCR2Q8TDQ0 301 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 APH1BQ8WW43 257 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 C8orf4Q9NR00 106 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 MRPS18AQ9NVS2 196 aaKnown RBP6.68□□□□□ -1.34
USP28-215ENST00000545608 TAS2R4Q9NYW5 299 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 ING4Q9UNL4 249 aa6.68□□□□□ -1.34
USP28-215ENST00000545608 IGHV3-72A0A0B4J1Y9 119 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 LOC100130705A0A1B0GUX0 176 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 C15orf65H3BRN8 121 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 MAGEB3O15480 346 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 FGF16O43320 207 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 MPZL2O60487 215 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 IGHG2P01859 326 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 LIMS3P0CW19 117 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 LIMS4P0CW20 117 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 REG1BP48304 166 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 KCNJ3P48549 501 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 PAX5Q02548 391 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 RAB40BQ12829 278 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 EBI3Q14213 229 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 RSU1Q15404 277 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 Q6ZNX1 250 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 SLC16A12Q6ZSM3 486 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 GPR141Q7Z602 305 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 SLC35E3Q7Z769 313 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 MOB3BQ86TA1 216 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 MINDY2Q8NBR6 621 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 OR10A7Q8NGE5 316 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 OR51D1Q8NGF3 324 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 OR10X1Q8NGY0 326 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 UBALD1Q8TB05 177 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 CHPT1Q8WUD6 406 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 ORAI1Q96D31 301 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 RBMXL1Q96E39 390 aaKnown RBP6.67□□□□□ -1.34
USP28-215ENST00000545608 Q96MT0 163 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 DUX3Q96PT4 197 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 P2RX4Q99571 388 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 DPCDQ9BVM2 203 aaPredicted RBP6.67□□□□□ -1.34
USP28-215ENST00000545608 ZFP57Q9NU63 452 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 ST3GAL6Q9Y274 331 aa6.67□□□□□ -1.34
USP28-215ENST00000545608 SIRT4Q9Y6E7 314 aaPredicted RBP6.67□□□□□ -1.34
USP28-215ENST00000545608 A0A087WXM4 84 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 IGHV1-3A0A0C4DH29 117 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 A0A1W2PP11 408 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 NUDT19A8MXV4 375 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 CCRL2O00421 344 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 HSD17B6O14756 317 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 GEMIN2O14893 280 aaKnown RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 OR7C1O76099 320 aaPredicted RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 GAPDHP04406 335 aaKnown RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 TFAP2AP05549 437 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 SMIM18P0DKX4 95 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 GZMHP20718 246 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 MYCNOSP40205 109 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 ETV1P50549 477 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 ZNF816Q0VGE8 651 aaPredicted RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 SMN1Q16637 294 aaKnown RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 LRRC36Q1X8D7 754 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 OR2G6Q5TZ20 316 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 STPG2Q8N412 459 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 Q8N6K4 173 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 CLRN3Q8NCR9 226 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 OR52N1Q8NH53 320 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 GPR148Q8TDV2 347 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 CCDC107Q8WV48 283 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 ARL11Q969Q4 196 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 TMEM106AQ96A25 262 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 CPNE2Q96FN4 548 aaPredicted RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 CNBD2Q96M20 576 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 RBM38Q9H0Z9 239 aaKnown RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 METTL9Q9H1A3 318 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 FGF20Q9NP95 211 aaPredicted RBP6.66□□□□□ -1.34
USP28-215ENST00000545608 FAM118AQ9NWS6 357 aa6.66□□□□□ -1.34
USP28-215ENST00000545608 IL36GQ9NZH8 169 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms