RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 COMMD1Q8N668 190 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 C9orf106Q8NAJ2 232 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 OR51H1Q8NH63 302 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 TAAR3PQ9P1P4 343 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 TRAPPC2LQ9UL33 140 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 A0A0G2JRQ6 117 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 SH2D1BO14796 132 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 CNOT4O95628 575 aaKnown RBP15.25■□□□□ 0.03
VIM-209ENST00000544301 IGLV2-14P01704 120 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 GRPP07492 148 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 PSG2P11465 335 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 HOXB1P14653 301 aaPredicted RBP15.25■□□□□ 0.03
VIM-209ENST00000544301 MMP9P14780 707 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 CBR1P16152 277 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 CTRB1P17538 263 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 CTRB2Q6GPI1 263 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 PRR18Q8N4B5 295 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 KLF14Q8TD94 323 aaPredicted RBP15.25■□□□□ 0.03
VIM-209ENST00000544301 TMEM171Q8WVE6 324 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 LOC400499M0QZD8 3231 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 TRAV17A0A0B4J275 112 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 CHST1O43916 411 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 AGFG2O95081 481 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 NXPH3O95157 252 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 PRH1P02810 166 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 SERPINE2P07093 398 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 WNT2P09544 360 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 ZNF266Q14584 549 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 VWA1Q6PCB0 445 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 TMEM182Q6ZP80 229 aaPredicted RBP15.24■□□□□ 0.03
VIM-209ENST00000544301 WDR31Q8NA23 367 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 SCRT1Q9BWW7 348 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 RNF115Q9Y4L5 304 aa15.24■□□□□ 0.03
VIM-209ENST00000544301 TMEM210A6NLX4 147 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 COX5AP20674 150 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 LMO1P25800 156 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 GPR146Q96CH1 333 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 AKR1E2Q96JD6 320 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 MBNL3Q9NUK0 354 aaKnown RBP15.23■□□□□ 0.03
VIM-209ENST00000544301 WIPI2Q9Y4P8 454 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 TTC28Q96AY4 2481 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 ZFHX4Q86UP3 3567 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 IGKV3-15P01624 115 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 UBALD1Q8TB05 177 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 NDRG3Q9UGV2 375 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 TINAGQ9UJW2 476 aa15.23■□□□□ 0.03
VIM-209ENST00000544301 OTOGLQ3ZCN5 2332 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 A0A1B0GU03 582 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 K7N7A8 449 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 ACAA1P09110 424 aaPredicted RBP15.22■□□□□ 0.03
VIM-209ENST00000544301 EPHA1P21709 976 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 NFYBP25208 207 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 ATP6V0CP27449 155 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 DYNLT3P51808 116 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PAX9P55771 341 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 GUK1Q16774 197 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 HFEQ30201 348 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 OR5C1Q8NGR4 320 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 HES4Q9HCC6 221 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 OBP2BQ9NPH6 170 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PPP1R3CQ9UQK1 317 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 RFNGQ9Y644 331 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PIGBOS1A0A0B4J2F0 54 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 MED19A0JLT2 244 aaPredicted RBP15.22■□□□□ 0.03
VIM-209ENST00000544301 WRBO00258 174 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 MLNRO43193 412 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 HSPA12AO43301 675 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 CST7O76096 145 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 SLC25A6P12236 298 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 HOXC12P31275 282 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PPT1P50897 306 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 BAXQ07812 192 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PEA15Q15121 130 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 HMGN3Q15651 99 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 C1orf162Q8NEQ5 155 aaPredicted RBP15.22■□□□□ 0.03
VIM-209ENST00000544301 FAM213BQ8TBF2 198 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 SARAFQ96BY9 339 aa15.22■□□□□ 0.03
VIM-209ENST00000544301 PRR33A8MZF0 331 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 HAND1O96004 215 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 IGKV1-39P01597 117 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 IGKV1D-39P04432 117 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 HEXAP06865 529 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 CEBPDP49716 269 aaPredicted RBP15.21■□□□□ 0.03
VIM-209ENST00000544301 FOXF2Q12947 444 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 OR8G5Q8NG78 346 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 OR2G3Q8NGZ4 309 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 OR14J1Q9UGF5 321 aa15.21■□□□□ 0.03
VIM-209ENST00000544301 ASPMQ8IZT6 3477 aa15.21■□□□□ 0.02
VIM-209ENST00000544301 KIAA1324LA8MWY0 1029 aaPredicted RBP15.2■□□□□ 0.02
VIM-209ENST00000544301 C11orf53Q8IXP5 236 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 KPTNQ9Y664 436 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 SPENQ96T58 3664 aaKnown RBP15.2■□□□□ 0.02
VIM-209ENST00000544301 CEACAM6P40199 344 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 IZUMO4Q1ZYL8 232 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 DEFB109BQ30KR1 87 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 ACSF3Q4G176 576 aaPredicted RBP15.2■□□□□ 0.02
VIM-209ENST00000544301 Q6ZRM9 215 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 ZNF826PQ6ZT77 177 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 TMEM217Q8N7C4 229 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 EIF5A2Q9GZV4 153 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms