RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PNKD	Q8N490	385 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	TEX29	Q8N6K0	151 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	GVQW1	Q8N7I0	195 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545		Q8N7P7	452 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR13D1	Q8NGV5	346 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	NANP	Q8TBE9	248 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	FCAMR	Q8WWV6	532 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	KIRREL1	Q96J84	757 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	ABHD1	Q96SE0	405 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	TBX15	Q96SF7	602 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	SCPEP1	Q9HB40	452 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR2S2	Q9NQN1	319 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	MBNL3	Q9NUK0	354 aa	Known RBP	8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	VPS13C	Q709C8	3753 aa		8.33	□□□□□ -1.08
CPSF7-221	ENST00000543545	ACAN	P16112	2415 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	ABCA1	O95477	2261 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV3-43	A0A0B4J1X8	118 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	MEIOC	A2RUB1	952 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	NPIPB11	E5RHQ5	1161 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	C15orf65	H3BRN8	121 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	SULT1C2	O00338	296 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	TOR1A	O14656	332 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	BET1	O15155	118 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	HSPA12A	O43301	675 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	RBBP9	O75884	186 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	AVP	P01185	164 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV3-7	P01780	117 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	RBP4	P02753	201 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	GSTT2	P0CG29	244 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	GSTT2B	P0CG30	244 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV3-43D	P0DP04	118 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	MMP9	P14780	707 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	GDNF	P39905	211 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	ARPC4	P59998	168 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	KLRD1	Q13241	179 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	HMGN3	Q15651	99 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	CHRFAM7A	Q494W8	412 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	FAM120AOS	Q5T036	256 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	GPR157	Q5UAW9	335 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	IL17REL	Q6ZVW7	336 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	ZNF554	Q86TJ5	538 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	CCDC190	Q86UF4	302 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	HOGA1	Q86XE5	327 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	ABHD12	Q8N2K0	398 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	C11orf42	Q8N5U0	333 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	BEST4	Q8NFU0	473 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR10A7	Q8NGE5	316 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR52L2P	Q8NGH6	319 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR10V1	Q8NGI7	309 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR52I2	Q8NH67	350 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	UPRT	Q96BW1	309 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OCSTAMP	Q9BR26	566 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	BEX2	Q9BXY8	128 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	OTOG	Q6ZRI0	2925 aa		8.32	□□□□□ -1.08
CPSF7-221	ENST00000543545	TRAV40	A0A0B4J280	105 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	GABARAP	H6UMI1	98 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR3A3	P47888	321 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	GNG10	P50151	68 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	LGALS4	P56470	323 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	MRPS10	P82664	201 aa	Known RBP	8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	SRSF7	Q16629	238 aa	Known RBP eCLIP	8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545		Q6ZPA2	131 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	OR4A4P	Q8NGN8	299 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	GPX8	Q8TED1	209 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	LEAP2	Q969E1	77 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	GINS4	Q9BRT9	223 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	TMEM133	Q9H2Q1	129 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	LINC00574	Q9H8X3	128 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	GFOD1	Q9NXC2	390 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	SLC23A1	Q9UHI7	598 aa		8.31	□□□□□ -1.08
CPSF7-221	ENST00000543545	FLNA	P21333	2647 aa	Known RBP	8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGKV1D-8	A0A087WSZ0	117 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV2-26	A0A0B4J1V2	119 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV1-69D	A0A0B4J2H0	117 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	CENPVL3	A0A0U1RRI6	287 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545		A0A1W2PPE3	182 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	RNASEK-C17orf49	H0YIS7	233 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	F2RL2	O00254	374 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	RGS11	O94810	467 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV1-69	P01742	117 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	ARG1	P05089	322 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	CTXN2	P0C2S0	81 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGHV4-38-2	P0DP08	117 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	HOXB4	P17483	251 aa	Predicted RBP	8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	ZBTB25	P24278	435 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	HLA-DMA	P28067	261 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	RCVRN	P35243	200 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	PPP1CC	P36873	323 aa	Known RBP	8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	CEACAM6	P40199	344 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	INPP1	P49441	399 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	UBE2E1	P51965	193 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	PRRX1	P54821	245 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	ACTB	P60709	375 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	ACTG1	P63261	375 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	HTD2	P86397	168 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	DGCR2	P98153	550 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	TMEM30B	Q3MIR4	351 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	IGSF11	Q5DX21	431 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	STEAP3	Q658P3	488 aa		8.3	□□□□□ -1.08
CPSF7-221	ENST00000543545	FAM53A	Q6NSI3	398 aa	Predicted RBP	8.3	□□□□□ -1.08

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms