RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TMEM65Q6PI78 240 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 SLC25A48Q6ZT89 311 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 ZDHHC13Q8IUH4 622 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 CCDC197Q8NCU1 140 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 CCDC107Q8WV48 283 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 RIBC2Q9H4K1 309 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 ST3GAL6Q9Y274 331 aa13.77□□□□□ -0.21
CLSTN3-214ENST00000542663 MAGEA13PA6NCF6 341 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 GYG2O15488 501 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 TXNL1O43396 289 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 ORC5O43913 435 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 RAB9AP51151 201 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 RBM11P57052 281 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 Q3ZCU0 254 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 AMIGO2Q86SJ2 522 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 SATL1Q86VE3 508 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 GPER1Q99527 375 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 FAM192AQ9GZU8 254 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 OR51J1Q9H342 316 aa13.76□□□□□ -0.21
CLSTN3-214ENST00000542663 GEMIN2O14893 280 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 OR7C1O76099 320 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 CDRT1O95170 752 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 CNTFRP26992 372 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 GABPB1Q06547 395 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 LSAMPQ13449 338 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 GALEQ14376 348 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 MMDQ15546 238 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 DNAL1Q4LDG9 190 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 CT45A1Q5HYN5 189 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 NHLRC3Q5JS37 347 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 ACSM6Q6P461 480 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 ACBD7Q8N6N7 88 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 CT45A3Q8NHU0 189 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 ISOC1Q96CN7 298 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 SLC7A6OSQ96CW6 309 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 RITA1Q96K30 269 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 PDCD1LG2Q9BQ51 273 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 ISG20L2Q9H9L3 353 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 TPSG1Q9NRR2 321 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 DHDHQ9UQ10 334 aa13.75□□□□□ -0.21
CLSTN3-214ENST00000542663 E9PI62 339 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 HLA-DRB1P01911 266 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 MT-ND4P03905 459 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 RAB3AP20336 220 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 SRSF7Q16629 238 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 ZNF497Q6ZNH5 498 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 Q8N1Y9 231 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 MINDY2Q8NBR6 621 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 OR6Q1Q8NGQ2 317 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 TSEN15Q8WW01 171 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 CPNE2Q96FN4 548 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 EXOGQ9Y2C4 368 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 TNCP24821 2201 aa13.74□□□□□ -0.21
CLSTN3-214ENST00000542663 PLECQ15149 4684 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 IGHV7-81A0A0B4J1V7 117 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 TRAV41A0A0B4J266 112 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 TMEM212A6NML5 194 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 C12orf77C9JDV5 145 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 LINC01619G3V211 115 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 LDLRAD4O15165 306 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 IGHV4-30-4P0DP06 118 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 FASP25445 335 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 BLVRBP30043 206 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 C19orf54Q5BKX5 351 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 SLC25A30Q5SVS4 291 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 LHFPL3Q86UP9 236 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 OR10V1Q8NGI7 309 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 OR52N1Q8NH53 320 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 OR5AK2Q8NH90 309 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 TRUB1Q8WWH5 349 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 RGP1Q92546 391 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 ARPC1AQ92747 370 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 ALG8Q9BVK2 526 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 TOLLIPQ9H0E2 274 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 PARP11Q9NR21 331 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 TAS2R4Q9NYW5 299 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 IL36GQ9NZH8 169 aa13.73□□□□□ -0.21
CLSTN3-214ENST00000542663 IGHV4OR15-8A0A075B7B6 117 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 A0A087WW49 117 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 AIPO00170 330 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 SOX15O60248 233 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 VEGFCP49767 419 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 ATAD3CQ5T2N8 411 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 SYS1Q8N2H4 156 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 LGALS12Q96DT0 336 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 JAM3Q9BX67 310 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 ANKRD60Q9BZ19 345 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 C19orf73Q9NVV2 129 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 AASSQ9UDR5 926 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 OAZ3Q9UMX2 235 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 FBXO7Q9Y3I1 522 aa13.72□□□□□ -0.21
CLSTN3-214ENST00000542663 A0A1W2PP11 408 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 MAGEB3O15480 346 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 LANCL1O43813 399 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 SERPINA2P20848 420 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 ACTBP60709 375 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 LINC00596Q86U02 117 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 HAPLN4Q86UW8 402 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 CASTOR1Q8WTX7 329 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 METTL9Q9H1A3 318 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms