RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 TAC3Q9UHF0 121 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 ANXA10Q9UJ72 324 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 KLF13Q9Y2Y9 288 aaPredicted RBP1.17□□□□□ -2.22
PRKDC-210ENST00000541488 TRAPPC1Q9Y5R8 145 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 BZW2Q9Y6E2 419 aaKnown RBP1.17□□□□□ -2.22
PRKDC-210ENST00000541488 ZNF780BQ9Y6R6 833 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 ARHGEF10O15013 1369 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 MRC1P22897 1456 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 CCDC141Q6ZP82 1450 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 TENM1Q9UKZ4 2725 aa1.17□□□□□ -2.22
PRKDC-210ENST00000541488 PPIP5K1Q6PFW1 1433 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CASKIN1Q8WXD9 1431 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 LAMA5O15230 3695 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 IGSF10Q6WRI0 2623 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 TRAV8-7A0A075B6U6 113 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SLC5A10A0PJK1 596 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CD300LBA8K4G0 201 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 C15orf65H3BRN8 121 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 K7EPK0 472 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 RFXANKO14593 260 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 RGS5O15539 181 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 AQP9O43315 295 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 VAPBO95292 243 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CDK1P06493 297 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 MLNP12872 115 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CD9P21926 228 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 DYNC1I2Q13409 638 aaKnown RBP1.16□□□□□ -2.22
PRKDC-210ENST00000541488 ENDOGQ14249 297 aaKnown RBP1.16□□□□□ -2.22
PRKDC-210ENST00000541488 ZNF404Q494X3 552 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 AMMECR1LQ6DCA0 310 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 TCF24Q7RTU0 167 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 COMTD1Q86VU5 262 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CPNE9Q8IYJ1 553 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 LINC00337Q8N6G1 96 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 OR4C13Q8NGP0 309 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 ITLN2Q8WWU7 325 aaPredicted RBP1.16□□□□□ -2.22
PRKDC-210ENST00000541488 YPEL4Q96NS1 127 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 QKIQ96PU8 341 aaKnown RBP eCLIP1.16□□□□□ -2.22
PRKDC-210ENST00000541488 VAT1Q99536 393 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CHID1Q9BWS9 393 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SHCBP1LQ9BZQ2 653 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SRRQ9GZT4 340 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 ANKHQ9HCJ1 492 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SDHAF3Q9NRP4 125 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SLX4Q8IY92 1834 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 LRPPRCP42704 1394 aaKnown RBP1.16□□□□□ -2.22
PRKDC-210ENST00000541488 CSMD1Q96PZ7 3565 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 NF1P21359 2839 aa1.16□□□□□ -2.22
PRKDC-210ENST00000541488 SMG6Q86US8 1419 aaKnown RBP1.15□□□□□ -2.22
PRKDC-210ENST00000541488 CELSR1Q9NYQ6 3014 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 LOC389332A0A1B0GUA5 103 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 LEUTXA8MZ59 168 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 H3BQ85 93 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 TAC1P20366 129 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 PTNP21246 168 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 IMPA1P29218 277 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 DNASE1L1P49184 302 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 FMODQ06828 376 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 BNIP2Q12982 314 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ZNF141Q15928 474 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 SSX1Q16384 188 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 NDUFAF6Q330K2 333 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 CAVIN4Q5BKX8 364 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 TTMPQ5BVD1 217 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 LDLRAD2Q5SZI1 272 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ZNF470Q6ECI4 717 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 SLC25A25Q6KCM7 469 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 PID1Q7Z2X4 250 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 TMEM144Q7Z5S9 345 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 CYP4Z1Q86W10 505 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 AMN1Q8IY45 258 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 SYS1Q8N2H4 156 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ASCC1Q8N9N2 400 aaKnown RBP1.15□□□□□ -2.23
PRKDC-210ENST00000541488 OR4A15Q8NGL6 344 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 CHRNA10Q9GZZ6 450 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ASB7Q9H672 318 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 TMEM38BQ9NVV0 291 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 DDIT4Q9NX09 232 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 SDHAF2Q9NX18 166 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 DNAJC27Q9NZQ0 273 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ZNF831Q5JPB2 1677 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 RGPD2P0DJD1 1756 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 YLPM1P49750 1951 aaKnown RBP1.15□□□□□ -2.23
PRKDC-210ENST00000541488 OTOFQ9HC10 1997 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 FAM186AA6NE01 2351 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 DSPP15924 2871 aaKnown RBP1.15□□□□□ -2.23
PRKDC-210ENST00000541488 NAIPQ13075 1403 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 ARHGAP31Q2M1Z3 1444 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 NSD3Q9BZ95 1437 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 NRCAMQ92823 1304 aa1.15□□□□□ -2.23
PRKDC-210ENST00000541488 CHD9Q3L8U1 2897 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 RP1L1Q8IWN7 2480 aaPredicted RBP1.14□□□□□ -2.23
PRKDC-210ENST00000541488 A0A1B0GUL6 1792 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 CELSR2Q9HCU4 2923 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 MTUS2Q5JR59 1369 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 IGHV3-21A0A0B4J1V1 117 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 K7ERS5 55 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 SLC31A1O15431 190 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 COX7A2P2O60397 106 aa1.14□□□□□ -2.23
PRKDC-210ENST00000541488 ENTPD6O75354 484 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms