RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 NBR2O15453 112 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 MITFO75030 526 aaPredicted RBP4.78□□□□□ -1.64
CD44-237ENST00000534082 OR2A4O95047 310 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 GADD45GO95257 159 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 CYB5AP00167 134 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 IFNGP01579 166 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ZNF3P17036 446 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 CD40LGP29965 261 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 C21orf33P30042 268 aaPredicted RBP4.78□□□□□ -1.64
CD44-237ENST00000534082 IFNGR2P38484 337 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 KIR2DS2P43631 304 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ALDH3A2P51648 485 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 FUT6P51993 359 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 APOC4P55056 127 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ACTBP60709 375 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 LSAMPQ13449 338 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 UBE2V2Q15819 145 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 TATDN3Q17R31 274 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ZNF829Q3KNS6 432 aaPredicted RBP4.78□□□□□ -1.64
CD44-237ENST00000534082 MOGAT2Q3SYC2 334 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 TNFAIP8L3Q5GJ75 292 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 LIN54Q6MZP7 749 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 CD200R1LQ6Q8B3 271 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 LINC00311Q8N616 119 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 DNAAF1Q8NEP3 725 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 OR10A7Q8NGE5 316 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 OR14K1Q8NGZ2 314 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 GNPDA2Q8TDQ7 276 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 MRGPRDQ8TDS7 321 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 OTULINQ96BN8 352 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 BORCS8Q96FH0 119 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 C7orf26Q96N11 449 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ZNF251Q9BRH9 671 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 DGCR6LQ9BY27 220 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 COMMD4Q9H0A8 199 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 ZC4H2Q9NQZ6 224 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 PEMTQ9UBM1 199 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 GTF2A1LQ9UNN4 478 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 DHDHQ9UQ10 334 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 RRP15Q9Y3B9 282 aaKnown RBP4.78□□□□□ -1.64
CD44-237ENST00000534082 A0A1B0GTI1 187 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 DHRS7CA6NNS2 312 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 EPM2AB3EWF7 344 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 GSTA4O15217 222 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 MAGEB3O15480 346 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 AIREO43918 545 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 GATBO75879 557 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 TRBV12-3P01733 135 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 CSTBP04080 98 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 EGR2P11161 476 aaPredicted RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 BTF3P20290 206 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 ALOX5APP20292 161 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 VHLP40337 213 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 ZNF137PP52743 207 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 SMIM11AP58511 58 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 CX3CL1P78423 397 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 TMEM267Q0VDI3 215 aaPredicted RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 SF3A3Q12874 501 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-237ENST00000534082 RPEL1Q2QD12 228 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 LGALS9BQ3B8N2 356 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 SOHLH1Q5JUK2 328 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 SAMD4BQ5PRF9 694 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 BCL2L15Q5TBC7 163 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 ZNF660Q6AZW8 331 aaPredicted RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 Q6P435 159 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 UNQ5815/PRO19632Q6UWF5 114 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 PPP1R27Q86WC6 154 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 C8orf31Q8N9H6 132 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 CHST4Q8NCG5 386 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 OR2T33Q8NG76 320 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 OR51T1Q8NGJ9 327 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 FAM162AQ96A26 154 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 RCN3Q96D15 328 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 RITA1Q96K30 269 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 C7orf34Q96L11 122 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 C18orf15Q96N68 181 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 FAM103A1Q9BTL3 118 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 TSSK6Q9BXA6 273 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 OR51V1Q9H2C8 321 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 MOB1AQ9H8S9 216 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 CMC2Q9NRP2 79 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 ZNF355PQ9NSJ1 428 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 INTS9Q9NV88 658 aaKnown RBP4.77□□□□□ -1.65
CD44-237ENST00000534082 IL20Q9NYY1 176 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 LAMP5Q9UJQ1 280 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 RNF150Q9ULK6 438 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 NUBP2Q9Y5Y2 271 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 RNF213Q63HN8 5207 aa4.77□□□□□ -1.65
CD44-237ENST00000534082 TRAV39A0A0B4J263 110 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 PRR32B1ATL7 298 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 LOC110117498-PIK3R3F6TDL0 507 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 SDCBPO00560 298 aaPredicted RBP4.76□□□□□ -1.65
CD44-237ENST00000534082 UBE2CO00762 179 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 SLC31A2O15432 143 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 NDUFA3O95167 84 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 SOX14O95416 240 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 NPPAP01160 153 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 RBP2P50120 134 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 MFAP2P55001 183 aa4.76□□□□□ -1.65
CD44-237ENST00000534082 DEFA5Q01523 94 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms