RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RRP9O43818 475 aaKnown RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 MOSP00540 346 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 GPR12P47775 334 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 GP2P55259 537 aaKnown RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 EGFEM1PQ0D2K5 195 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 PNLIPRP3Q17RR3 467 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 CXorf66Q5JRM2 361 aaPredicted RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 TTC23Q5W5X9 447 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 RAB12Q6IQ22 244 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 GLIPR1L1Q6UWM5 242 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 ZNF497Q6ZNH5 498 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 IZUMO1Q8IYV9 350 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 LINC00311Q8N616 119 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 RTN4IP1Q8WWV3 396 aaPredicted RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 MUL1Q969V5 352 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 MRPS24Q96EL2 167 aaKnown RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS28-215ENST00000531924 LIN7CQ9NUP9 197 aaKnown RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 CLEC2DQ9UHP7 191 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 SIRT4Q9Y6E7 314 aaPredicted RBP11.63□□□□□ -0.55
VPS28-215ENST00000531924 A0A1W2PP11 408 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 A0A1W2PPK0 400 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 CD1BP29016 333 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 EBI3Q14213 229 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 TMEM30BQ3MIR4 351 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 Q3ZCU0 254 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 SYT6Q5T7P8 510 aaPredicted RBP11.62□□□□□ -0.55
VPS28-215ENST00000531924 AWAT2Q6E213 333 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 TRAT1Q6PIZ9 186 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 ETV3LQ6ZN32 361 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 C18orf65Q6ZTR6 163 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 ZFP41Q8N8Y5 198 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 OR8H1Q8NGG4 311 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 OR10V1Q8NGI7 309 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 ABCG5Q9H222 651 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 KCNIP1Q9NZI2 227 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 PEX16Q9Y5Y5 336 aa11.62□□□□□ -0.55
VPS28-215ENST00000531924 TRAV8-7A0A075B6U6 113 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 TRBV5-5A0A0J9YX44 114 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 PNMA8CA0A1B0GUJ8 204 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 LINC01548A6NM66 108 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 C12orf77C9JDV5 145 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 CCL24O00175 119 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 GPX5O75715 221 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 CRTAPO75718 401 aaPredicted RBP11.61□□□□□ -0.55
VPS28-215ENST00000531924 MAS1P04201 325 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 IGFBP3P17936 291 aaPredicted RBP11.61□□□□□ -0.55
VPS28-215ENST00000531924 VDAC1P21796 283 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 TAS2R43P59537 309 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 DGCR2P98153 550 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 GPR50Q13585 617 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 LRRC36Q1X8D7 754 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 DMKNQ6E0U4 476 aaPredicted RBP11.61□□□□□ -0.55
VPS28-215ENST00000531924 OR4K15Q8NH41 348 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 DUX3Q96PT4 197 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 OR14A2Q96R54 314 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 S1PR3Q99500 378 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 SELENOIQ9C0D9 397 aa11.61□□□□□ -0.55
VPS28-215ENST00000531924 MAGEA13PA6NCF6 341 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 EFCAB10A6NFE3 127 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 CA11O75493 328 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 LALBAP00709 142 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 HBZP02008 142 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 RPLP1P05386 114 aaKnown RBP11.6□□□□□ -0.55
VPS28-215ENST00000531924 FSTP19883 344 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 SOX6P35712 828 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 CAPGP40121 348 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 ST3GAL4Q11206 333 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 FOXE3Q13461 319 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 SLC25A48Q6ZT89 311 aaKnown RBP11.6□□□□□ -0.55
VPS28-215ENST00000531924 CDH26Q8IXH8 852 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 DHRSXQ8N5I4 330 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 Q8N6K4 173 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 Q8N9W7 124 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 OR8U1Q8NH10 309 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 ST6GALNAC6Q969X2 333 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 P2RX4Q99571 388 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 BANF2Q9H503 90 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 DCLRE1BQ9H816 532 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 OR2S2Q9NQN1 319 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 C8orf4Q9NR00 106 aa11.6□□□□□ -0.55
VPS28-215ENST00000531924 RCC2Q9P258 522 aaKnown RBP11.6□□□□□ -0.55
VPS28-215ENST00000531924 ZNF736B4DX44 427 aaPredicted RBP11.59□□□□□ -0.55
VPS28-215ENST00000531924 MYL12BO14950 172 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 SLC31A2O15432 143 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 MGMTP16455 207 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 FUT3P21217 361 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 FAM53AQ6NSI3 398 aaPredicted RBP11.59□□□□□ -0.55
VPS28-215ENST00000531924 LCNL1Q6ZST4 164 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 TMEM104Q8NE00 496 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 OR5M8Q8NGP6 311 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 OR1L1Q8NH94 360 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 THRSPQ92748 146 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 TFAP2CQ92754 450 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 RAX2Q96IS3 184 aa11.59□□□□□ -0.55
VPS28-215ENST00000531924 TRBV5-7A0A0A0MS05 114 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 UBE2QL1A1L167 161 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 FAM90A10PA6NDY2 464 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 FAM90A7PA6NKC0 464 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 FAM90A23PA8MXZ1 464 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms