RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FAM27BQ5VT28 67 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 MOB3AQ96BX8 217 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 FREM1Q5H8C1 2179 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 LOC102723996A0A087X1L8 192 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 DFFBO76075 338 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 NRASP01111 189 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 IGLV3-1P01715 115 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 OPN1MWP04001 364 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 NPSP0C0P6 89 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 RFPL3SP0C7P2 107 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 OPN1MW2P0DN77 364 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 OPN1MW3P0DN78 364 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 BCL2P10415 239 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 CNN3Q15417 329 aaKnown RBP12.17□□□□□ -0.46
USP48-213ENST00000529637 ADIRFQ15847 76 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 PLCXD3Q63HM9 321 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 C16orf82Q7Z2V1 217 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 SIGLEC12Q96PQ1 595 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 ZNF442Q9H7R0 627 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 IL17BQ9UHF5 180 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 FRYQ5TBA9 3013 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 OR7C1O76099 320 aaPredicted RBP12.17□□□□□ -0.46
USP48-213ENST00000529637 PFN1P07737 140 aaKnown RBP12.17□□□□□ -0.46
USP48-213ENST00000529637 GDF1P27539 372 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 GNRHRP30968 328 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 RAC3P60763 192 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 RAB35Q15286 201 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 TRIM61Q5EBN2 209 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 RTL6Q6ICC9 239 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 BTNL3Q6UXE8 466 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 ZNF695Q8IW36 515 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 IL22RA1Q8N6P7 574 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 GNPNAT1Q96EK6 184 aaPredicted RBP12.17□□□□□ -0.46
USP48-213ENST00000529637 ADGRG7Q96K78 797 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 TMEM222Q9H0R3 208 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 SRD5A3Q9H8P0 318 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 PLA2G3Q9NZ20 509 aa12.17□□□□□ -0.46
USP48-213ENST00000529637 UBE2J1Q9Y385 318 aaPredicted RBP12.17□□□□□ -0.46
USP48-213ENST00000529637 ELLP55199 621 aaPredicted RBP12.16□□□□□ -0.46
USP48-213ENST00000529637 PAX9P55771 341 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 MLF1P58340 268 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TAS2R30P59541 319 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 HNF4GQ14541 408 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 IZUMO4Q1ZYL8 232 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 SPIN3Q5JUX0 258 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TBC1D26Q86UD7 250 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 PCGF1Q9BSM1 259 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 ZNF407Q9C0G0 2248 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 IGKV1-12A0A0C4DH73 117 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 A0A1B0GUS0 222 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 CDS2O95674 445 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 IGKV1D-12P01611 117 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TCN2P20062 427 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 NTF4P34130 210 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TDGF1P3P51864 188 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 NUBP1P53384 320 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TMEM267Q0VDI3 215 aaPredicted RBP12.16□□□□□ -0.46
USP48-213ENST00000529637 ZNF787Q6DD87 383 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 SELENOHQ8IZQ5 122 aaKnown RBP12.16□□□□□ -0.46
USP48-213ENST00000529637 PLPPR1Q8TBJ4 325 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 SPSB1Q96BD6 273 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 FOXB1Q99853 325 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 ST3GAL6Q9Y274 331 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 CEBPZOSA8MTT3 80 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 PPYP01298 95 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 MBP02144 154 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TK1P04183 234 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 PNRC1Q12796 327 aaPredicted RBP12.16□□□□□ -0.46
USP48-213ENST00000529637 NCR3LG1Q68D85 454 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 OR10D3Q8NH80 312 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 ABHD3Q8WU67 409 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 TMEM38BQ9NVV0 291 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 FUT9Q9Y231 359 aa12.16□□□□□ -0.46
USP48-213ENST00000529637 MARCH11A6NNE9 402 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 GCGP01275 180 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 CD33P20138 364 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 OTX1P32242 354 aaPredicted RBP12.15□□□□□ -0.46
USP48-213ENST00000529637 HERV-K104P61576 105 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 MRPL41Q8IXM3 137 aaKnown RBP12.15□□□□□ -0.46
USP48-213ENST00000529637 ZNF845Q96IR2 970 aaPredicted RBP12.15□□□□□ -0.46
USP48-213ENST00000529637 TMEM208Q9BTX3 173 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 SLC7A10Q9NS82 523 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 P4HTMQ9NXG6 502 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 CISD1Q9NZ45 108 aaKnown RBP12.15□□□□□ -0.46
USP48-213ENST00000529637 HBE1P02100 147 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 SPINK2P20155 84 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 DTYMKP23919 212 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 WNT5AP41221 380 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 PSG4Q00888 419 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 SLC25A26Q70HW3 274 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 OR10G4Q8NGN3 311 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 FGFBP3Q8TAT2 258 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 ATP5SQ99766 215 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 RBKSQ9H477 322 aa12.15□□□□□ -0.46
USP48-213ENST00000529637 CEACAM1P13688 526 aa12.15□□□□□ -0.47
USP48-213ENST00000529637 DUSP3P51452 185 aaPredicted RBP12.15□□□□□ -0.47
USP48-213ENST00000529637 ZNF92Q03936 586 aa12.15□□□□□ -0.47
USP48-213ENST00000529637 SLC25A24Q6NUK1 477 aa12.15□□□□□ -0.47
USP48-213ENST00000529637 NEK7Q8TDX7 302 aa12.15□□□□□ -0.47
USP48-213ENST00000529637 SGCZQ96LD1 299 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms