RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 HDHD2Q9H0R4 259 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 ASB7Q9H672 318 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 RDH14Q9HBH5 336 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 C1orf109Q9NX04 203 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 S4R3C0 116 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 KDM3BQ7LBC6 1761 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 DOCK3Q8IZD9 2030 aa2.45□□□□□ -2.02
CD44-223ENST00000526553 NUP214P35658 2090 aaPredicted RBP2.45□□□□□ -2.02
CD44-223ENST00000526553 ELP1O95163 1332 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 MYH3P11055 1940 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 ALPK3Q96L96 1907 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 RIC1Q4ADV7 1423 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 GMNCA6NCL1 334 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 RBFOX3A6NFN3 312 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 BTNL10A8MVZ5 291 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 TOR1AO14656 332 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 COX7A2P2O60397 106 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 UGT2B11O75310 529 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 NDUFS6O75380 124 aaKnown RBP2.44□□□□□ -2.02
CD44-223ENST00000526553 DHRS3O75911 302 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 LHBP01229 141 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 IGKV1-39P01597 117 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 IGKV1D-39P04432 117 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 TPM3P06753 285 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 LGALS7P47929 136 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 CMC4P56277 68 aaPredicted RBP2.44□□□□□ -2.02
CD44-223ENST00000526553 TPM4P67936 248 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 ZNF616Q08AN1 781 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 KLHL12Q53G59 568 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 OR10J3Q5JRS4 329 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 UBE2NLQ5JXB2 153 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 DEFB123Q8N688 67 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 TMEM105Q8N8V8 129 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 ST20-AS1Q8NBB2 130 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 ZNF555Q8NEP9 628 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 CASTOR1Q8WTX7 329 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 MRAP2Q96G30 205 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 ASCL3Q9NQ33 180 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 CA10Q9NS85 328 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 COMMD9Q9P000 198 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 HMGXB4Q9UGU5 601 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 TAC3Q9UHF0 121 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 NOSIPQ9Y314 301 aaKnown RBP2.44□□□□□ -2.02
CD44-223ENST00000526553 PUS1Q9Y606 427 aaKnown RBP eCLIP2.44□□□□□ -2.02
CD44-223ENST00000526553 ZNF780BQ9Y6R6 833 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 BRCA2P51587 3418 aa2.44□□□□□ -2.02
CD44-223ENST00000526553 OTOFQ9HC10 1997 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 LRRC37AA6NMS7 1700 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 IGKV1-6A0A0C4DH72 117 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 A0A1B0GXF2 115 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 PRAMEF26H0Y7S4 382 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 M0QXV9 152 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 PHYHO14832 338 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 TOX3O15405 576 aaPredicted RBP2.43□□□□□ -2.02
CD44-223ENST00000526553 GYG2O15488 501 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ZNF35P13682 527 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 NTF3P20783 257 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 IMPA1P29218 277 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 TSPOP30536 169 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 OR10A3P58181 314 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 RHOAP61586 193 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 HBG1P69891 147 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 HBG2P69892 147 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 MEF2CQ06413 473 aaPredicted RBP2.43□□□□□ -2.02
CD44-223ENST00000526553 FUT5Q11128 374 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ELOCQ15369 112 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 SSX1Q16384 188 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 KRTAP13-2Q52LG2 175 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ACTBL2Q562R1 376 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 MRPL2Q5T653 305 aaKnown RBP2.43□□□□□ -2.02
CD44-223ENST00000526553 KPRPQ5T749 579 aaPredicted RBP2.43□□□□□ -2.02
CD44-223ENST00000526553 TPGS1Q6ZTW0 290 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 NEGR1Q7Z3B1 354 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ITPRIPQ8IWB1 547 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ZDHHC22Q8N966 263 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ATP6V1C2Q8NEY4 427 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 OR6K3Q8NGY3 331 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ACTL9Q8TC94 416 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 DDIT4LQ96D03 193 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 THTPAQ9BU02 230 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 MFSD1Q9H3U5 465 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 C15orf41Q9Y2V0 281 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 RTL9Q8NET4 1388 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 DUOX1Q9NRD9 1551 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 UNC80Q8N2C7 3258 aa2.43□□□□□ -2.02
CD44-223ENST00000526553 ZNF609O15014 1411 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 HTTP42858 3142 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 C2orf16Q68DN1 1984 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 LAMB1P07942 1786 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 IBTKQ9P2D0 1353 aaPredicted RBP2.42□□□□□ -2.02
CD44-223ENST00000526553 MYBPHLA2RUH7 354 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 GOLGA6L4A6NEF3 574 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 GOLGA8RI6L899 631 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 FFAR1O14842 300 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 RGS5O15539 181 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 SYNGR1O43759 233 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 PDCD6O75340 191 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 ENTPD6O75354 484 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 CBR3O75828 277 aa2.42□□□□□ -2.02
CD44-223ENST00000526553 RAB36O95755 333 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms