RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 CBLN4Q9NTU7 201 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 FBXO34Q9NWN3 711 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 CNIH4Q9P003 139 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 MARCH4Q9P2E8 410 aaPredicted RBP4.33□□□□□ -1.72
CD44-218ENST00000525469 ZNF223Q9UK11 482 aaPredicted RBP4.33□□□□□ -1.72
CD44-218ENST00000525469 ZNF346Q9UL40 294 aaKnown RBP4.33□□□□□ -1.72
CD44-218ENST00000525469 SLC45A2Q9UMX9 530 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 ST3GAL6Q9Y274 331 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 NSG2Q9Y328 171 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 WIPI2Q9Y4P8 454 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 COX11Q9Y6N1 276 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 CUBNO60494 3623 aa4.33□□□□□ -1.72
CD44-218ENST00000525469 KCNE1BA0A087WTH5 132 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 IGHV1-45A0A0A0MS14 117 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 IGHV2OR16-5A0A0B4J2B6 119 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 TRBV2A0A0J9YWF9 115 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 SERTM2A0A1B0GWG4 89 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RBFOX3A6NFN3 312 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 OR2AG2A6NM03 316 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZNF705FA8MVS1 300 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 TRAF3IP2O43734 574 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 GCM2O75603 506 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 TYMSP04818 313 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 SP1P08047 785 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 CYC1P08574 325 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZNF705DP0CH99 300 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 ZNF705BP0CI00 300 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 COX6A1P12074 109 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 CSNK2A2P19784 350 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 MC5RP33032 325 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ACAA2P42765 397 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 OR1D4P47884 311 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 CSNK1A1P48729 337 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 EMP2P54851 167 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MANFP55145 182 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 LIM2P55344 173 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 TAS2R41P59536 307 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RPL23AP62750 156 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 IRF8Q02556 426 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RASGEF1BQ0VAM2 473 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 GGTLC2Q14390 218 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MELKQ14680 651 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ADIPOQQ15848 244 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PMCHL1Q16048 86 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PCK2Q16822 640 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ODF4Q2M2E3 257 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 KRTAP24-1Q3LI83 254 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 C3orf36Q3SXR2 165 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RNASE12Q5GAN4 147 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 SPINK14Q6IE38 97 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 TMEM220Q6QAJ8 160 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MBOAT2Q6ZWT7 520 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 GTF2H5Q6ZYL4 71 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 C5orf24Q7Z6I8 188 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 C17orf64Q86WR6 236 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 BCL6BQ8N143 479 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 C10orf111Q8N326 155 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PAQR4Q8N4S7 273 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 METTL27Q8N6F8 245 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 ZFP41Q8N8Y5 198 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 BOLLQ8N9W6 283 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 MORN4Q8NDC4 146 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MDS2Q8NDY4 140 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 OR10H4Q8NGA5 316 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ARRDC2Q8TBH0 407 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZCCHC10Q8TBK6 192 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RPS4Y2Q8TD47 263 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 RNASE8Q8TDE3 154 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 CASTOR1Q8WTX7 329 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 FRZBQ92765 325 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MRPL24Q96A35 216 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 SLC25A38Q96DW6 304 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZNF503Q96F45 646 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PERPQ96FX8 193 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 C4orf36Q96KX1 117 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 MS4A10Q96PG2 267 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 SIGLEC12Q96PQ1 595 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 OR7D2Q96RA2 312 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PYGO2Q9BRQ0 406 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 EFCAB11Q9BUY7 163 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 HES7Q9BYE0 225 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ATG10Q9H0Y0 220 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 PLEKHF2Q9H8W4 249 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 FAM60AQ9NP50 221 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 NOX4Q9NPH5 578 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 YAE1D1Q9NRH1 226 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 CMC2Q9NRP2 79 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ZCCHC3Q9NUD5 404 aaKnown RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 C1orf123Q9NWV4 160 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ANKRD10Q9NXR5 420 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 ARL15Q9NXU5 204 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 B3GAT1Q9P2W7 334 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 CKLFQ9UBR5 152 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 B4GALT7Q9UBV7 327 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 SLC22A13Q9Y226 551 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 HRNRQ86YZ3 2850 aaPredicted RBP4.32□□□□□ -1.72
CD44-218ENST00000525469 ZANQ9Y493 2812 aa4.32□□□□□ -1.72
CD44-218ENST00000525469 FREM3P0C091 2139 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CR1P17927 2039 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms