RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 FAHD2AQ96GK7 314 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 SMR3AQ99954 134 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 ZNF286AQ9HBT8 521 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 IFT46Q9NQC8 304 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 MTFP1Q9UDX5 166 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 ACANP16112 2415 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 ABCA1O95477 2261 aa13.33□□□□□ -0.27
LSM1-204ENST00000522515 WNK2Q9Y3S1 2297 aa13.33□□□□□ -0.27
LSM1-204ENST00000522515 FABP7O15540 132 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 GSTZ1O43708 216 aaPredicted RBP13.33□□□□□ -0.28
LSM1-204ENST00000522515 RBBP9O75884 186 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 IGHV1-8P0DP01 117 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 GATA3P23771 443 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 KIR2DS4P43632 304 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 PRB3Q04118 309 aaPredicted RBP13.33□□□□□ -0.28
LSM1-204ENST00000522515 LSAMPQ13449 338 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 KIR2DS1Q14954 304 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 LTC4SQ16873 150 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 METTL11BQ5VVY1 283 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 ZNF782Q6ZMW2 699 aaPredicted RBP13.33□□□□□ -0.28
LSM1-204ENST00000522515 C1orf122Q6ZSJ8 110 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 Q8N402 240 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 S100ZQ8WXG8 99 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 KIRREL1Q96J84 757 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 SDHCQ99643 169 aaPredicted RBP13.33□□□□□ -0.28
LSM1-204ENST00000522515 TMPRSS13Q9BYE2 586 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 C7orf69Q9H7B7 122 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 IDI2-AS1Q9NZ38 188 aa13.33□□□□□ -0.28
LSM1-204ENST00000522515 IGKV1-6A0A0C4DH72 117 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 F2RL2O00254 374 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 LANCL1O43813 399 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 CD5LO43866 347 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 TOX4O94842 621 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 RBP4P02753 201 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 NAT1P18440 290 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 HERPUD1Q15011 391 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 IGSF11Q5DX21 431 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 UTF1Q5T230 341 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 FAM53AQ6NSI3 398 aaPredicted RBP13.32□□□□□ -0.28
LSM1-204ENST00000522515 VMO1Q7Z5L0 202 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 IL1F10Q8WWZ1 152 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 GALMQ96C23 342 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 TBX15Q96SF7 602 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 PCGF1Q9BSM1 259 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 METTL8Q9H825 291 aaKnown RBP13.32□□□□□ -0.28
LSM1-204ENST00000522515 SIRT7Q9NRC8 400 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 ANXA10Q9UJ72 324 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 RBMX2Q9Y388 322 aaKnown RBP13.32□□□□□ -0.28
LSM1-204ENST00000522515 AUP1Q9Y679 476 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 SVEP1Q4LDE5 3571 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 IGHV3-43A0A0B4J1X8 118 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 hCG_1809904A0A1W2PP81 198 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 A0A1W2PPE2 198 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 A0A1W2PR64 198 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 A0A1W2PRV1 198 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 AVPP01185 164 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 IGHV3-43DP0DP04 118 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 PRTN3P24158 256 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 FPR2P25090 351 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 RCVRNP35243 200 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 LYSMD2Q8IV50 215 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 GDPD1Q8N9F7 314 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 OR4A4PQ8NGN8 299 aa13.32□□□□□ -0.28
LSM1-204ENST00000522515 THAP7Q9BT49 309 aaPredicted RBP13.32□□□□□ -0.28
LSM1-204ENST00000522515 FAM172BPA6NC97 362 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 J3QLI3 93 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 SDCBPO00560 298 aaPredicted RBP13.31□□□□□ -0.28
LSM1-204ENST00000522515 FOSL1P15407 271 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 NFYBP25208 207 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 LOXL3P58215 753 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 ACTBP60709 375 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 ACTG1P63261 375 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 BAK1Q16611 211 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 C1orf229Q6ZS94 237 aaPredicted RBP13.31□□□□□ -0.28
LSM1-204ENST00000522515 OR10A7Q8NGE5 316 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 OR52L2PQ8NGH6 319 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 TNFRSF14Q92956 283 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 UNKLQ9H9P5 680 aaKnown RBP13.31□□□□□ -0.28
LSM1-204ENST00000522515 RAB9BQ9NP90 201 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 SESN1Q9Y6P5 492 aa13.31□□□□□ -0.28
LSM1-204ENST00000522515 CSPG4Q6UVK1 2322 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 BET1O15155 118 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 LY6G6DO95868 133 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 HLA-DMAP28067 261 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 HTD2P86397 168 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 SSBP1Q04837 148 aaKnown RBP13.3□□□□□ -0.28
LSM1-204ENST00000522515 GNMTQ14749 295 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 ZNF846Q147U1 533 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 OR5AP2Q8NGF4 316 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 LEAP2Q969E1 77 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 TRIM63Q969Q1 353 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 CABLES2Q9BTV7 478 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 SUCNR1Q9BXA5 334 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 OR2S2Q9NQN1 319 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 OR1A1Q9P1Q5 309 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 SLC23A1Q9UHI7 598 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 KCNS2Q9ULS6 477 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 HIVEP1P15822 2718 aa13.3□□□□□ -0.28
LSM1-204ENST00000522515 J3QRK9 145 aa13.29□□□□□ -0.28
LSM1-204ENST00000522515 IGHV3-7P01780 117 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms