RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FAM162AQ96A26 154 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CPNE2Q96FN4 548 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 RNF170Q96K19 258 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 C17orf77Q96MU5 243 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 NR1H4Q96RI1 486 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 INTS14Q96SY0 518 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CCL13Q99616 98 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 LITAFQ99732 161 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 YIPF3Q9GZM5 350 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 SEMA6AQ9H2E6 1030 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FN3KQ9H479 309 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 SIRT7Q9NRC8 400 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 MRPL22Q9NWU5 206 aaKnown RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 VNN3Q9NY84 501 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 DPM3Q9P2X0 92 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 ENOPH1Q9UHY7 261 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 MRM2Q9UI43 246 aaKnown RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 AMMECR1Q9Y4X0 333 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 SESN1Q9Y6P5 492 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 V9GYQ6 96 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OBSCNQ5VST9 7968 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 IGKV1D-17A0A075B6S4 117 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 A0A1B0GU03 582 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 A0A1B0GVY2 172 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TCRBV4S1A1TA0A5B7 111 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 C15orf62A8K5M9 175 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 FAM90A26D6RGX4 464 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CASQ2O14958 399 aaPredicted RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 TXNL1O43396 289 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SYNGR1O43759 233 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 FKBP6O75344 327 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 BAG2O95816 211 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CYB5AP00167 134 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SERPINA3P01011 423 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 IGLV3-1P01715 115 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SEMG1P04279 462 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 H2BFMP0C1H6 154 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 PSG2P11465 335 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SPI1P17947 270 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CCL1P22362 96 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 PRDX2P32119 198 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CDX1P47902 265 aaPredicted RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 PRRX1P54821 245 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 ZNF121P58317 390 aaPredicted RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 SLC34A1Q06495 639 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 PRDX4Q13162 271 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TMED1Q13445 227 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 EIF2B1Q14232 305 aaKnown RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 ZNF146Q15072 292 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 LY6EQ16553 131 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CLVS2Q5SYC1 327 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 ZNF684Q5T5D7 378 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 C9orf66Q5T8R8 295 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 OGFRL1Q5TC84 451 aaPredicted RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 LINC01590Q5TEZ4 76 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 GLYATQ6IB77 296 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TEX38Q6PEX7 206 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CORO6Q6QEF8 472 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TBPL2Q6SJ96 375 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 HEPN1Q6WQI6 88 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 GDPD3Q7L5L3 318 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 VTCN1Q7Z7D3 282 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 WDR86Q86TI4 376 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TRPT1Q86TN4 253 aaKnown RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 CCDC190Q86UF4 302 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 DHFR2Q86XF0 187 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 AQP12AQ8IXF9 295 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 ZNF679Q8IYX0 411 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 OR8H3Q8N146 312 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 C8orf31Q8N9H6 132 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SLC37A3Q8NCC5 494 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TMEM185AQ8NFB2 350 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 FAM81AQ8TBF8 368 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CANT1Q8WVQ1 401 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 PP6455Q8WZ26 134 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CORO2AQ92828 525 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 STMN2Q93045 179 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SPSB1Q96BD6 273 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 PGAM5Q96HS1 289 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 NSMCE2Q96MF7 247 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 ZNF714Q96N38 554 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 RBM14Q96PK6 669 aaKnown RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 ABHD6Q9BV23 337 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 OSBPL10Q9BXB5 764 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 CLEC7AQ9BXN2 247 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 RERGLQ9H628 205 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 YY1AP1Q9H869 796 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 LINC00574Q9H8X3 128 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 WDR76Q9H967 626 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 RANGRFQ9HD47 186 aaPredicted RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 CENPMQ9NSP4 180 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 ACTR3BQ9P1U1 418 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 NUFIP1Q9UHK0 495 aaKnown RBP3.03□□□□□ -1.92
USP54-217ENST00000498213 RHBDD3Q9Y3P4 386 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 GMPPBQ9Y5P6 360 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 LYVE1Q9Y5Y7 322 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 SMAD5-AS1Q9Y6J3 95 aa3.03□□□□□ -1.92
USP54-217ENST00000498213 TRGV10A0A0A0MS01 117 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 IGHV2-26A0A0B4J1V2 119 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TRBV4-1A0A0J9YWV2 114 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms