RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SPINT2O43291 252 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 ORC5O43913 435 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 IGHV3-7P01780 117 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 HBZP02008 142 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 RBP4P02753 201 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 IGHV3-43DP0DP04 118 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 S100A5P33763 92 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 UTF1Q5T230 341 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 GPR157Q5UAW9 335 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 RUSC1-AS1Q66K80 236 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 NCR3LG1Q68D85 454 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 ZNF880Q6PDB4 577 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 HEPN1Q6WQI6 88 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 BRD3OSQ6XYD6 125 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 MOB1BQ7L9L4 216 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 IL1F10Q8WWZ1 152 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 TNFRSF14Q92956 283 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 KIRREL1Q96J84 757 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 TMEM133Q9H2Q1 129 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 HEXA-AS1Q9H8Q6 139 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 TMEM160Q9NX00 188 aa9.73□□□□□ -0.85
CUX1-210ENST00000497815 MEIOCA2RUB1 952 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 NPIPB11E5RHQ5 1161 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 HLA-DQB1P01920 261 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 MELTFP08582 738 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 SCTP09683 121 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 FPR2P25090 351 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 TNFSF8P32971 234 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 PRSS3P35030 304 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 GNG10P50151 68 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 HLA-DRB3P79483 266 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 PITPNAQ00169 270 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 HMGN3Q15651 99 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 OR52W1Q6IF63 320 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 HCP5Q6MZN7 132 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 FAM53AQ6NSI3 398 aaPredicted RBP9.72□□□□□ -0.85
CUX1-210ENST00000497815 TEX29Q8N6K0 151 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 OR52L2PQ8NGH6 319 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 OR10V1Q8NGI7 309 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 OR13D1Q8NGV5 346 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 C22orf15Q8WYQ4 148 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 GNG12Q9UBI6 72 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 CDC42EP3Q9UKI2 254 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 SOX21Q9Y651 276 aaPredicted RBP9.72□□□□□ -0.85
CUX1-210ENST00000497815 A3GALT2U3KPV4 340 aa9.72□□□□□ -0.85
CUX1-210ENST00000497815 IGKV1D-8A0A087WSZ0 117 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 IGHV2-26A0A0B4J1V2 119 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 IGHV1-69DA0A0B4J2H0 117 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 TRDCB7Z8K6 153 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 FSHBP01225 129 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 IGHV1-69P01742 117 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 ARG1P05089 322 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 GSTT2P0CG29 244 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 GSTT2BP0CG30 244 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 DTYMKP23919 212 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 IL18Q14116 193 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 GNMTQ14749 295 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 CHRFAM7AQ494W8 412 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 ABHD12Q8N2K0 398 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 GVQW1Q8N7I0 195 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 GALMQ96C23 342 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 CLEC7AQ9BXN2 247 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 MS4A7Q9GZW8 240 aaPredicted RBP9.71□□□□□ -0.86
CUX1-210ENST00000497815 LINC00574Q9H8X3 128 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 UNKLQ9H9P5 680 aaKnown RBP9.71□□□□□ -0.86
CUX1-210ENST00000497815 ZNF286AQ9HBT8 521 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 RAB9BQ9NP90 201 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 IFT46Q9NQC8 304 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 OR2S2Q9NQN1 319 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 ZNF69Q9UC07 566 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 NUP50Q9UKX7 468 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 MGAT4AQ9UM21 535 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 ABCA1O95477 2261 aa9.71□□□□□ -0.86
CUX1-210ENST00000497815 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.7□□□□□ -0.865e-10■□□□□ 8.5
CUX1-210ENST00000497815 F8P00451 2351 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 A0A1W2PPE3 182 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 FABP12A6NFH5 140 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 POM121CA8CG34 1229 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 F2RL2O00254 374 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 TOR1AO14656 332 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 NPFFO15130 113 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 BET1O15155 118 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 FABP7O15540 132 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 SRD5A1P18405 259 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 PPP1CCP36873 323 aaKnown RBP9.7□□□□□ -0.86
CUX1-210ENST00000497815 KIR2DS4P43632 304 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 UBE2E1P51965 193 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 KIR2DS1Q14954 304 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 IGSF11Q5DX21 431 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 FAM131AQ6UXB0 335 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 ZNF554Q86TJ5 538 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 BCL6BQ8N143 479 aaPredicted RBP9.7□□□□□ -0.86
CUX1-210ENST00000497815 OR10A7Q8NGE5 316 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 OR6Q1Q8NGQ2 317 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 ABHD1Q96SE0 405 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 OR1A1Q9P1Q5 309 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 ZNRD1Q9P1U0 126 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 SLC23A1Q9UHI7 598 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 DOCK11Q5JSL3 2073 aa9.7□□□□□ -0.86
CUX1-210ENST00000497815 IGKV1-6A0A0C4DH72 117 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms