RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 HCP5Q6MZN7 132 aa11.47□□□□□ -0.57
COL6A3-212ENST00000491769 LEUTXA8MZ59 168 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 IL24Q13007 206 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 HIST3H3Q16695 136 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 OR1L6Q8NGR2 347 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 DDA1Q9BW61 102 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 IGHV1-45A0A0A0MS14 117 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 WDR25Q64LD2 544 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-212ENST00000491769 PCSK4Q6UW60 755 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 ARL6IP6Q8N6S5 226 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 PAPPAQ13219 1627 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 TTC3P53804 2025 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 PPIAL4CA0A0B4J2A2 164 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 PPIAL4GP0DN37 164 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 DHRS2Q13268 280 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 C9orf40Q8IXQ3 194 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 ZNF519Q8TB69 540 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 FLRT3Q9NZU0 649 aa11.46□□□□□ -0.57
COL6A3-212ENST00000491769 GABRA6Q16445 453 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 CALHM1Q8IU99 346 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 LRRC75AQ8NAA5 344 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 SLC25A33Q9BSK2 321 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 TMEM56-RWDD3S4R434 201 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 H7C2G1 150 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 MPDU1O75352 247 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 P2RY6Q15077 328 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 ZNF385AQ96PM9 386 aaKnown RBP11.46□□□□□ -0.58
COL6A3-212ENST00000491769 PMS2P11Q13670 270 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 ATG4DQ86TL0 474 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-212ENST00000491769 TCTEX1D1Q8N7M0 179 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 OR8G5Q8NG78 346 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 NEURL2Q9BR09 285 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 MIOXQ9UGB7 285 aa11.46□□□□□ -0.58
COL6A3-212ENST00000491769 HYPMO75409 117 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 B2MP61769 119 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 YIPF6Q96EC8 236 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 PRSS50Q9UI38 385 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 CORTO00230 105 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 NDUFB6O95139 128 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 PSG2P11465 335 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 TEPPQ6URK8 271 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 IL17BQ9UHF5 180 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 PLPP2O43688 288 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 RAB9AP51151 201 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 WNT3P56703 355 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 RPS4Y2Q8TD47 263 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 MAST2Q6P0Q8 1798 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 BTF3P20290 206 aaKnown RBP11.45□□□□□ -0.58
COL6A3-212ENST00000491769 LDLRAD3Q86YD5 345 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 STPG3Q8N7X2 389 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 MRM2Q9UI43 246 aaKnown RBP11.45□□□□□ -0.58
COL6A3-212ENST00000491769 CLDN34H7C241 214 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 IQCJQ1A5X6 159 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 MPV17LQ2QL34 196 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 OR10G8Q8NGN5 311 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 ALG14Q96F25 216 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 PAXXQ9BUH6 204 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 ELOVL1Q9BW60 279 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 EXOGQ9Y2C4 368 aaKnown RBP11.45□□□□□ -0.58
COL6A3-212ENST00000491769 OR2W1Q9Y3N9 320 aa11.45□□□□□ -0.58
COL6A3-212ENST00000491769 LOC102724200A0A096LPH7 203 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TBX19O60806 448 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 UPK3AO75631 287 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 INHBBP09529 407 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 SSX1Q16384 188 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 CADM3Q8N126 398 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TMEFF2Q9UIK5 374 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 ZDHHC8Q9ULC8 765 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 DUXBA0A1W2PPF3 345 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TCRBV16S1A1N1A0A5B0 115 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TMEM189A5PLL7 270 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 FUCA1P04066 466 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 CTSDP07339 412 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 KLF9Q13886 244 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 C10orf35Q96D05 121 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 DUSP21Q9H596 190 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 MMP26Q9NRE1 261 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TO15178 435 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 PEX11BO96011 259 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 PPYP01298 95 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 SCGB1A1P11684 91 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 INPP5JQ15735 1006 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 SPRED2Q7Z698 418 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 LINC00596Q86U02 117 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 IGHV4-34P06331 123 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 PSG6Q00889 435 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 LRP11Q86VZ4 500 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 RPL29P47914 159 aaKnown RBP11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TLNRD1Q9H1K6 362 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 MTFP1Q9UDX5 166 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 SHROOM3Q8TF72 1996 aa11.44□□□□□ -0.58
COL6A3-212ENST00000491769 TMEM255AQ5JRV8 349 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 RAB37Q96AX2 223 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 TMEM204Q9BSN7 226 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 CEACAM18A8MTB9 384 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 TMEM183BQ1AE95 376 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 RPL36A-HNRNPH2H7BZ11 118 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 VSIG10L2P0DP72 767 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 CSF2RBP32927 897 aa11.43□□□□□ -0.58
COL6A3-212ENST00000491769 C1orf174Q8IYL3 243 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms