RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PIGXQ8TBF5 258 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 VN1R17PQ8TDU5 208 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 UBTD2Q8WUN7 234 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CANT1Q8WVQ1 401 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 APH1BQ8WW43 257 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SPRYD4Q8WW59 207 aaPredicted RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 MRPS31Q92665 395 aaKnown RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PSMG2Q969U7 264 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 MCHR2Q969V1 340 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM159Q96B96 161 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 UPRTQ96BW1 309 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CMBLQ96DG6 245 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 DTD2Q96FN9 168 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CYYR1Q96J86 154 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SMIM8Q96KF7 97 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 C4orf36Q96KX1 117 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR2M2Q96R28 347 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR2V2Q96R30 315 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 MBOAT4Q96T53 435 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OMDQ99983 421 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 MARVELD1Q9BSK0 173 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM43Q9BTV4 400 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PKIBQ9C010 78 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SELENOIQ9C0D9 397 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 IL22Q9GZX6 179 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SLC25A31Q9H0C2 315 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TLNRD1Q9H1K6 362 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR51E2Q9H255 320 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 C1orf198Q9H425 327 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ZDHHC6Q9H6R6 413 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 RNF167Q9H6Y7 350 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM185BQ9H7F4 350 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 AUNIPQ9H7T9 357 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 FN3KRPQ9HA64 309 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 POPDC2Q9HBU9 364 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 EML4Q9HC35 981 aaKnown RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF160Q9HCG1 818 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ACOT13Q9NPJ3 140 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR2S2Q9NQN1 319 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 EXOSC3Q9NQT5 275 aaKnown RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PXMP2Q9NR77 195 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 UBQLN4Q9NRR5 601 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 RBFOX1Q9NWB1 397 aaKnown RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 DDIT4Q9NX09 232 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TAS2R13Q9NYV9 303 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CALML5Q9NZT1 146 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 DOK5Q9P104 306 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PITPNC1Q9UKF7 332 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 FBXW2Q9UKT8 454 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 RAB22AQ9UL26 194 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF490Q9ULM2 529 aaPredicted RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ST3GAL6Q9Y274 331 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TPRKBQ9Y3C4 175 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PPIAL4AQ9Y536 164 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR51B4Q9Y5P0 310 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 IGSF9BQ9UPX0 1349 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PDCD11Q14690 1871 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 F5P12259 2224 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MGAM2Q2M2H8 2515 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 A0A087WUJ7 227 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TGIF2-C20orf24A0A0A6YYL0 155 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NPIPA5A0A0B4J1W7 369 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 IGHV2-70DA0A0C4DH43 119 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 A0A0D9SG52 128 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 KLF18A0A0U1RQI7 1052 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM269A0A1B0GVZ9 245 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1W2PNU3 283 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 FAM230AA0A1W2PPH8 454 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DHRS12A0PJE2 317 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 C7orf66A4D0T2 115 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TRAPPC13A5PLN9 417 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TVP23AA6NH52 213 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GJE1A6NN92 205 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DHRS7CA6NNS2 312 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR11H12B2RN74 326 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MCRIP1C9JLW8 97 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NPIPA5E9PKD4 350 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 F5H5T6 163 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 G3V3Q6 166 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 G3V3Y1 287 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TRAPPC2LH3BP13 241 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SGK494L7N484 410 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CYB561D2O14569 222 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CDIPTO14735 213 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 LYRM1O43325 122 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DUX1O43812 170 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GLSO94925 669 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR4F21O95013 312 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 FARS2O95363 451 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 UTS2O95399 124 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RAB36O95755 333 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TSPAN13O95857 204 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SLC16A8O95907 504 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HPRT1P00492 218 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 APODP05090 189 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 SERPINE1P05121 402 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CST2P09228 141 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MMP7P09237 267 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 OR5G3P0C626 314 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 GKN3PP0CG01 181 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms