RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZNF19P17023 458 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 VHLP40337 213 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 MMDQ15546 238 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 ACSM6Q6P461 480 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 SLC25A48Q6ZT89 311 aaKnown RBP10.78□□□□□ -0.68
VARS-227ENST00000489979 SATL1Q86VE3 508 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 PARP16Q8N5Y8 322 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 ARPC1AQ92747 370 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 PELI1Q96FA3 418 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 CIB1Q99828 191 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 KRTAP17-1Q9BYP8 105 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 FAM192AQ9GZU8 254 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 PARP11Q9NR21 331 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 CHCHD3Q9NX63 227 aaKnown RBP10.78□□□□□ -0.68
VARS-227ENST00000489979 ENOPH1Q9UHY7 261 aa10.78□□□□□ -0.68
VARS-227ENST00000489979 TNCP24821 2201 aa10.77□□□□□ -0.68
VARS-227ENST00000489979 TRAV41A0A0B4J266 112 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 J3QRE1 110 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 OR7C1O76099 320 aaPredicted RBP10.77□□□□□ -0.69
VARS-227ENST00000489979 ZNF134P52741 427 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 ZNF137PP52743 207 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 GALEQ14376 348 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 Q3ZCU0 254 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 Q8N1Y9 231 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 CPNE2Q96FN4 548 aaPredicted RBP10.77□□□□□ -0.69
VARS-227ENST00000489979 C4orf36Q96KX1 117 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 TOLLIPQ9H0E2 274 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 GABARAPL1Q9H0R8 117 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 RIBC2Q9H4K1 309 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 IFT22Q9H7X7 185 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 POMPQ9Y244 141 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 ST3GAL6Q9Y274 331 aa10.77□□□□□ -0.69
VARS-227ENST00000489979 IGHV4OR15-8A0A075B7B6 117 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 A0A087WW49 117 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 IGHV7-81A0A0B4J1V7 117 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 ORC5O43913 435 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 OR8U9P0C7N5 309 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 CNTFRP26992 372 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 BLVRBP30043 206 aaPredicted RBP10.76□□□□□ -0.69
VARS-227ENST00000489979 LSAMPQ13449 338 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 ATP6AP1Q15904 470 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 CT45A1Q5HYN5 189 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 ASCL4Q6XD76 172 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 HAPLN4Q86UW8 402 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 ZDHHC13Q8IUH4 622 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 MINDY2Q8NBR6 621 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 ZNF439Q8NDP4 499 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 OR10V1Q8NGI7 309 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 OR51A2Q8NGJ7 313 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 CT45A3Q8NHU0 189 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 RITA1Q96K30 269 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 OR4C12Q96R67 309 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 TPSG1Q9NRR2 321 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 C19orf73Q9NVV2 129 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 DHDHQ9UQ10 334 aa10.76□□□□□ -0.69
VARS-227ENST00000489979 A8MZ25 164 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 GEMIN2O14893 280 aaKnown RBP10.75□□□□□ -0.69
VARS-227ENST00000489979 MAGEB3O15480 346 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 JTBO76095 146 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 CDRT1O95170 752 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 HLA-DRB1P01911 266 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 MT-ND4P03905 459 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 RAB3AP20336 220 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 RBM11P57052 281 aaKnown RBP10.75□□□□□ -0.69
VARS-227ENST00000489979 ACTBP60709 375 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 PITPNAQ00169 270 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 ATAD3CQ5T2N8 411 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 LYPD6Q86Y78 171 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 OR52N1Q8NH53 320 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 NEK7Q8TDX7 302 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 CASTOR1Q8WTX7 329 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 TSEN15Q8WW01 171 aaKnown RBP10.75□□□□□ -0.69
VARS-227ENST00000489979 SPATA25Q9BR10 227 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 GABARAPL3Q9BY60 117 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 ANKRD60Q9BZ19 345 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 GNG12Q9UBI6 72 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 ING4Q9UNL4 249 aa10.75□□□□□ -0.69
VARS-227ENST00000489979 C12orf77C9JDV5 145 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 AIPO00170 330 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 LANCL1O43813 399 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 SOX15O60248 233 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 LGALS1P09382 135 aaKnown RBP10.74□□□□□ -0.69
VARS-227ENST00000489979 ECSCRQ19T08 205 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 NHLRC3Q5JS37 347 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 ZNF529Q6P280 563 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 ZNF497Q6ZNH5 498 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 AMIGO2Q86SJ2 522 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 SGPP2Q8IWX5 399 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 ACBD7Q8N6N7 88 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 PDCD1LG2Q9BQ51 273 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 ZNF251Q9BRH9 671 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 METTL9Q9H1A3 318 aa10.74□□□□□ -0.69
VARS-227ENST00000489979 MRPS28Q9Y2Q9 187 aaKnown RBP10.74□□□□□ -0.69
VARS-227ENST00000489979 A0A1W2PN81 502 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 TMEM212A6NML5 194 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 NBR2O15453 112 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 GYG2O15488 501 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 SPINT2O43291 252 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 HSPA12AO43301 675 aa10.73□□□□□ -0.69
VARS-227ENST00000489979 CSTBP04080 98 aaKnown RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms