RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LINC01560Q8TB33 94 aa10.28□□□□□ -0.76
HDAC6-230ENST00000488543 C2CD4CQ8TF44 421 aa10.28□□□□□ -0.76
HDAC6-230ENST00000488543 CA5BP1Q8WTZ4 195 aa10.28□□□□□ -0.76
HDAC6-230ENST00000488543 TOMM40LQ969M1 308 aa10.28□□□□□ -0.76
HDAC6-230ENST00000488543 ZNF2Q9BSG1 426 aaPredicted RBP10.28□□□□□ -0.76
HDAC6-230ENST00000488543 ZNF442Q9H7R0 627 aa10.28□□□□□ -0.76
HDAC6-230ENST00000488543 LSM5Q9Y4Y9 91 aaKnown RBP10.28□□□□□ -0.76
HDAC6-230ENST00000488543 TRBV6-7A0A0A0MS04 114 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 TMEM210A6NLX4 147 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 C9JQL5 133 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 TIMM8AO60220 97 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 ZG16O60844 167 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 AKR1D1P51857 326 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 NKX6-1P78426 367 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 IL13RA2Q14627 380 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 PEG10Q86TG7 708 aaKnown RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 LINC00596Q86U02 117 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 C11orf53Q8IXP5 236 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 C1orf174Q8IYL3 243 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 ARL11Q969Q4 196 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 MRPL24Q96A35 216 aaKnown RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 SLC5A7Q9GZV3 580 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 PLK3Q9H4B4 646 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 DPRXA6NFQ7 191 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 MED6O75586 246 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 CRYAAP02489 173 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 PGA5P0DJD9 388 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 CD40P25942 277 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 RBMXP38159 391 aaKnown RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 ASCL1P50553 236 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 RBM39Q14498 530 aaKnown RBP10.27□□□□□ -0.77
HDAC6-230ENST00000488543 Q6P435 159 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 LRP11Q86VZ4 500 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 NRIP2Q9BQI9 281 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 RHOFQ9HBH0 211 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 RAB18Q9NP72 206 aa10.27□□□□□ -0.77
HDAC6-230ENST00000488543 CHD6Q8TD26 2715 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 TRAV24A0A0B4J272 114 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 GCH1P30793 250 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 FXYD4P59646 89 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 IAH1Q2TAA2 248 aaPredicted RBP10.26□□□□□ -0.77
HDAC6-230ENST00000488543 HFEQ30201 348 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 RNF141Q8WVD5 230 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 GTF3AQ92664 365 aaKnown RBP10.26□□□□□ -0.77
HDAC6-230ENST00000488543 C2orf50Q96LR7 162 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 CXXC4Q9H2H0 198 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 IFT22Q9H7X7 185 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 ANKHD1Q8IWZ3 2542 aaKnown RBP10.26□□□□□ -0.77
HDAC6-230ENST00000488543 ABCA4P78363 2273 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 RAB19A4D1S5 217 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 CDIPTO14735 213 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 NAPSAO96009 420 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 GRPP07492 148 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 MSL2Q9HCI7 577 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 UQCC1Q9NVA1 299 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 LPAR3Q9UBY5 353 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 DUSP13Q9UII6 198 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 RALYQ9UKM9 306 aaKnown RBP10.26□□□□□ -0.77
HDAC6-230ENST00000488543 POLDIP2Q9Y2S7 368 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 MYO18BQ8IUG5 2567 aa10.26□□□□□ -0.77
HDAC6-230ENST00000488543 PKDREJQ9NTG1 2253 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 A0A1B0GV50 99 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 ACAA1P09110 424 aaPredicted RBP10.25□□□□□ -0.77
HDAC6-230ENST00000488543 HKR1P10072 659 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 BTF3P20290 206 aaKnown RBP10.25□□□□□ -0.77
HDAC6-230ENST00000488543 BSPH1Q075Z2 132 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 TM4SF20Q53R12 229 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 SLC22A25Q6T423 547 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 SVBPQ8N300 66 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 SUMF2Q8NBJ7 301 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 ERGIC1Q969X5 290 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF286AQ9HBT8 521 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.25□□□□□ -0.77
HDAC6-230ENST00000488543 DIRAS3O95661 229 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 OR5H8P0DN80 308 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 PVALBP20472 110 aaPredicted RBP10.25□□□□□ -0.77
HDAC6-230ENST00000488543 GLRXP35754 106 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 CHD3Q12873 2000 aaKnown RBP10.25□□□□□ -0.77
HDAC6-230ENST00000488543 PHLDA2Q53GA4 152 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 PRAMEF6Q5VXH4 476 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 Q6ZS49 121 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 Q8IYB0 196 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 TAF9BQ9HBM6 251 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 HES4Q9HCC6 221 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 KCNJ16Q9NPI9 418 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 FBXL17Q9UF56 701 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 MLXQ9UH92 298 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 RFNGQ9Y644 331 aa10.25□□□□□ -0.77
HDAC6-230ENST00000488543 DCHS2Q6V1P9 2916 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 HSPB6O14558 160 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 OR8U9P0C7N5 309 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 CD80P33681 288 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 CYCSP99999 105 aaKnown RBP10.24□□□□□ -0.77
HDAC6-230ENST00000488543 UQCC3Q6UW78 93 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 ZNF826PQ6ZT77 177 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 OR8U1Q8NH10 309 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 TMEM171Q8WVE6 324 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 RNASE6Q93091 150 aaKnown RBP10.24□□□□□ -0.77
HDAC6-230ENST00000488543 AQP10Q96PS8 301 aa10.24□□□□□ -0.77
HDAC6-230ENST00000488543 GPHA2Q96T91 129 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms