RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ACTR1BP42025 376 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 C10orf91Q5T1B1 145 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 FAM45BPQ6NSW5 357 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 SUN5Q8TC36 379 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 CCDC12Q8WUD4 166 aaPredicted RBP2.81□□□□□ -1.96
VPS50-212ENST00000476413 ZNF514Q96K75 400 aaPredicted RBP2.81□□□□□ -1.96
VPS50-212ENST00000476413 ARL6Q9H0F7 186 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 SLC23A2Q9UGH3 650 aa2.81□□□□□ -1.96
VPS50-212ENST00000476413 CHD2O14647 1828 aaKnown RBP2.81□□□□□ -1.96
VPS50-212ENST00000476413 CLUHO75153 1309 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 RAD50Q92878 1312 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 FABP12A6NFH5 140 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 GOLGA8RI6L899 631 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 ADAP1O75689 374 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 CDK14O94921 469 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 OPN1SWP03999 348 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 GYPCP04921 128 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 PSKH1P11801 424 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 CTSEP14091 401 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 UBE2G2P60604 165 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 SKP1P63208 163 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 HENMT1Q5T8I9 393 aaKnown RBP2.8□□□□□ -1.96
VPS50-212ENST00000476413 HCP5Q6MZN7 132 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 C2orf73Q8N5S3 287 aaPredicted RBP2.8□□□□□ -1.96
VPS50-212ENST00000476413 YIPF7Q8N8F6 280 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 SPPL2BQ8TCT7 592 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 GPR22Q99680 433 aa2.8□□□□□ -1.96
VPS50-212ENST00000476413 PUS1Q9Y606 427 aaKnown RBP eCLIP2.8□□□□□ -1.96
VPS50-212ENST00000476413 ATAD5Q96QE3 1844 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 IGLV10-54A0A075B6I4 117 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 GUSBP08236 651 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 PVALBP20472 110 aaPredicted RBP2.79□□□□□ -1.96
VPS50-212ENST00000476413 RCVRNP35243 200 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 GTF2BQ00403 316 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 CENPWQ5EE01 88 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 EBLN2Q6P2I7 272 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 SPNS3Q6ZMD2 512 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 NIT1Q86X76 327 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 HS3ST5Q8IZT8 346 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 LFNGQ8NES3 379 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 ATP6V1C2Q8NEY4 427 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 OR5L1Q8NGL2 311 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 RAD51AP1Q96B01 352 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 TAMM41Q96BW9 452 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 KCNIP2Q9NS61 270 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 CARHSP1Q9Y2V2 147 aaKnown RBP2.79□□□□□ -1.96
VPS50-212ENST00000476413 MTCH2Q9Y6C9 303 aa2.79□□□□□ -1.96
VPS50-212ENST00000476413 COL5A1P20908 1838 aaPredicted RBP2.78□□□□□ -1.96
VPS50-212ENST00000476413 SLC31A1O15431 190 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 SYNGR2O43760 224 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 ORM1P02763 201 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 ZNF22P17026 224 aaPredicted RBP2.78□□□□□ -1.96
VPS50-212ENST00000476413 APOFQ13790 326 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 C4orf26Q17RF5 130 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 SCXQ7RTU7 201 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 CMTM2Q8TAZ6 248 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 OR5P3Q8WZ94 311 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 UPF3BQ9BZI7 483 aaKnown RBP2.78□□□□□ -1.96
VPS50-212ENST00000476413 SHANK3Q9BYB0 1731 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 CEP170Q5SW79 1584 aa2.78□□□□□ -1.96
VPS50-212ENST00000476413 LCTP09848 1927 aa2.78□□□□□ -1.97
VPS50-212ENST00000476413 A0A1W2PNM2 257 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 GRPRP30550 384 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 COILP38432 576 aaPredicted RBP2.77□□□□□ -1.97
VPS50-212ENST00000476413 KRTAP10-1P60331 282 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 LRRC26Q2I0M4 334 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 PYCR3Q53H96 274 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 TTC33Q6PID6 262 aaPredicted RBP2.77□□□□□ -1.97
VPS50-212ENST00000476413 DOLPP1Q86YN1 238 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 RIBC1Q8N443 379 aaPredicted RBP2.77□□□□□ -1.97
VPS50-212ENST00000476413 GALMQ96C23 342 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 C11orf49Q9H6J7 331 aa2.77□□□□□ -1.97
VPS50-212ENST00000476413 IMP3Q9NV31 184 aaKnown RBP2.77□□□□□ -1.97
VPS50-212ENST00000476413 CACNA1SQ13698 1873 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 FTCDNL1E5RQL4 147 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 LIN7AO14910 233 aaPredicted RBP2.76□□□□□ -1.97
VPS50-212ENST00000476413 CBR3O75828 277 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 GADD45AP24522 165 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 CLDN12P56749 244 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 PDGFRLQ15198 375 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 OR8G1Q15617 311 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 EXOC3L4Q17RC7 722 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 SLC13A5Q86YT5 568 aaPredicted RBP2.76□□□□□ -1.97
VPS50-212ENST00000476413 HIST1H2BAQ96A08 127 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 LLPHQ9BRT6 129 aaKnown RBP2.76□□□□□ -1.97
VPS50-212ENST00000476413 LTBP2Q14767 1821 aa2.76□□□□□ -1.97
VPS50-212ENST00000476413 BRD4O60885 1362 aaPredicted RBP2.75□□□□□ -1.97
VPS50-212ENST00000476413 KLRC4-KLRK1H3BQV0 150 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 CETN3O15182 167 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 EEF1E1O43324 174 aaKnown RBP2.75□□□□□ -1.97
VPS50-212ENST00000476413 MEF2BQ02080 365 aaPredicted RBP2.75□□□□□ -1.97
VPS50-212ENST00000476413 TNFRSF9Q07011 255 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 ZFAND2AQ8N6M9 145 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 TMEM75Q8N9X5 138 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 OR5K1Q8NHB7 308 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 STOML3Q8TAV4 291 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 C7orf50Q9BRJ6 194 aaKnown RBP2.75□□□□□ -1.97
VPS50-212ENST00000476413 ZNF426Q9BUY5 554 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 GTSF1LQ9H1H1 148 aa2.75□□□□□ -1.97
VPS50-212ENST00000476413 TMEM216Q9P0N5 145 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms