RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 C2orf83Q53S99 150 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 SNRNP40Q96DI7 357 aaKnown RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 MUCL1Q96DR8 90 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 NABP2Q9BQ15 211 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CCL16O15467 120 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 MRPL33O75394 65 aaKnown RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 B3GALT4O96024 378 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CD8AP01732 235 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CFIP05156 583 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF117Q03924 483 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 C5orf47Q569G3 176 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF114Q8NC26 417 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 OTOSQ8NHW6 89 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 DLX4Q92988 240 aaPredicted RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 KNL1Q8NG31 2342 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 PRSS37A4D1T9 235 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 C1orf105O95561 183 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 MNX1P50219 401 aaPredicted RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CRYBA4P53673 196 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZXDAP98168 799 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 FXYD3Q14802 87 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF714Q96N38 554 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 OCIAD1Q9NX40 245 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 RBPJLQ9UBG7 517 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 TIMM10BQ9Y5J6 103 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 QRICH2Q9H0J4 1663 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CA11O75493 328 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ETHE1O95571 254 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 OR9G9P0C7N8 305 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 HBBP68871 147 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CD300LDQ6UXZ3 194 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 PQLC2Q6ZP29 291 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 PLPPR1Q8TBJ4 325 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 C20orf144Q9BQM9 153 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 MS4A5Q9H3V2 200 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 TNFRSF12AQ9NP84 129 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 IL36BQ9NZH7 164 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 CEACAM8P31997 349 aaPredicted RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 FOXA3P55318 350 aaPredicted RBP7.89□□□□□ -1.15
COL6A3-210ENST00000473258 GNG3P63215 75 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF766Q5HY98 468 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 OR10J3Q5JRS4 329 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ABHD17BQ5VST6 288 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 TMEM215Q68D42 235 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 S1PR5Q9H228 398 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 SDF2L1Q9HCN8 221 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 KNTC1P50748 2209 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TRAV26-1A0A087WT03 109 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 J3KT08 172 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TMEM258P61165 79 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 GNB1P62873 340 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 RPL18Q07020 188 aaKnown RBP7.88□□□□□ -1.15
COL6A3-210ENST00000473258 IGFBP7Q16270 282 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TOX2Q96NM4 488 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 SLC52A3Q9NQ40 469 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TAAR2Q9P1P5 351 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 V9GYY9 64 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TRBV20-1A0A075B6N2 111 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TRBV24-1A0A075B6N3 115 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 ADM5C9JUS6 153 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 LINC01387J3KSC0 135 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 MLNRO43193 412 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TIMM8AO60220 97 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-210ENST00000473258 ORM2P19652 201 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 SLC48A1Q6P1K1 146 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 FGF13Q92913 245 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 LRRC61Q9BV99 259 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 SYNGR1O43759 233 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 IGHV4-39P01824 125 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 PRDX1Q06830 199 aaKnown RBP7.88□□□□□ -1.15
COL6A3-210ENST00000473258 ABHD17CQ6PCB6 329 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TMEM91Q6ZNR0 172 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 SDF2Q99470 211 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 RNF39Q9H2S5 420 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 TRAV21A0A0B4J279 112 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 A0A0U1RQV5 110 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 A0A1W2PPE3 182 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 MPDU1O75352 247 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 C2orf68Q2NKX9 166 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 DUX4L9Q6RFH8 374 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-210ENST00000473258 ZADH2Q8N4Q0 377 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF707Q96C28 371 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-210ENST00000473258 PGLYRP4Q96LB8 373 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 HES7Q9BYE0 225 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 EPDR1Q9UM22 224 aa7.88□□□□□ -1.15
COL6A3-210ENST00000473258 SPATA31A5Q5VU36 1347 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 SPATA31A7Q8IWB4 1347 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 KLKB1P03952 638 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 GRPP07492 148 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 LHX2P50458 406 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 RPS4XP62701 263 aaKnown RBP7.87□□□□□ -1.15
COL6A3-210ENST00000473258 HIST1H4AP62805 103 aaKnown RBP7.87□□□□□ -1.15
COL6A3-210ENST00000473258 GGTLC2Q14390 218 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 KISS1Q15726 138 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 LRRC10Q5BKY1 277 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 FKBP1CQ5VVH2 108 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 FAM181AQ8N9Y4 354 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 SRSF8Q9BRL6 282 aaKnown RBP7.87□□□□□ -1.15
COL6A3-210ENST00000473258 ABHD14AQ9BUJ0 271 aa7.87□□□□□ -1.15
COL6A3-210ENST00000473258 NPFFR1Q9GZQ6 430 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms