RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 TMED9Q9BVK6 235 aa12.16□□□□□ -0.46
CHD3-205ENST00000449744 CST11Q9H112 138 aa12.16□□□□□ -0.46
CHD3-205ENST00000449744 NKX1-2Q9UD57 310 aaPredicted RBP12.16□□□□□ -0.46
CHD3-205ENST00000449744 NOTCH1P46531 2555 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 CA11O75493 328 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 FUT3P21217 361 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 REG1BP48304 166 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 ZNF816Q0VGE8 651 aaPredicted RBP12.15□□□□□ -0.46
CHD3-205ENST00000449744 SPHARQ15513 63 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 MED22Q15528 200 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 TMEM30BQ3MIR4 351 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 Q3ZCU0 254 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 KHDC1LQ5JSQ8 128 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 RBM48Q5RL73 367 aaKnown RBP12.15□□□□□ -0.46
CHD3-205ENST00000449744 SAMD5Q5TGI4 173 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 GLT8D1Q68CQ7 371 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 TRAT1Q6PIZ9 186 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 LYPD6Q86Y78 171 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 PRR18Q8N4B5 295 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 LINC00311Q8N616 119 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 C8orf31Q8N9H6 132 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 TMEM104Q8NE00 496 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 FAM46BQ96A09 425 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 GNG12Q9UBI6 72 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 TPRKBQ9Y3C4 175 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 TSSC4Q9Y5U2 329 aaPredicted RBP12.15□□□□□ -0.46
CHD3-205ENST00000449744 VWFP04275 2813 aa12.15□□□□□ -0.46
CHD3-205ENST00000449744 IGHV1-3A0A0C4DH29 117 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 UBE2QL1A1L167 161 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 C12orf77C9JDV5 145 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 H0YHG0 523 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 MPIG6BO95866 241 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 GLAP06280 429 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 UBBP0CG47 229 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 VHLP40337 213 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 AQP4P55087 323 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 LOXL3P58215 753 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 INSL4Q14641 139 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 BEAN1Q3B7T3 259 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 UNQ9370/PRO34162Q6UXP9 181 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 C5orf56Q8N8D9 126 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 Q96M66 194 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 KCNIP1Q9NZI2 227 aa12.14□□□□□ -0.47
CHD3-205ENST00000449744 PLXNB1O43157 2135 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 IGHV3-72A0A0B4J1Y9 119 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 PSMB11A5LHX3 300 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 FGF16O43320 207 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 PDCD6O75340 191 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 HBZP02008 142 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 PF4P02776 101 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 CD33P20138 364 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 HSD17B12Q53GQ0 312 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 NKAPLQ5M9Q1 402 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 FAM27D1Q5T7N8 215 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 FAM53AQ6NSI3 398 aaPredicted RBP12.13□□□□□ -0.47
CHD3-205ENST00000449744 CEACAM19Q7Z692 300 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 OR10V1Q8NGI7 309 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 OR2T10Q8NGZ9 312 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 OR1L1Q8NH94 360 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 PHYHIPQ92561 330 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 UFD1Q92890 307 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 NEDD4LQ96PU5 975 aa12.13□□□□□ -0.47
CHD3-205ENST00000449744 NCBP2LA6PVI3 153 aaKnown RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 SERPINE3A8MV23 424 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 TXNL1O43396 289 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 SC5DO75845 299 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 RCC1P18754 421 aaPredicted RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 SRMP19623 302 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 OXLD1Q5BKU9 147 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 TCTEX1D4Q5JR98 221 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 KPRPQ5T749 579 aaPredicted RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 C10orf99Q6UWK7 81 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 SLC35E3Q7Z769 313 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 IZUMO1Q8IYV9 350 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 GAPTQ8N292 157 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 NRG4Q8WWG1 115 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 RTN4IP1Q8WWV3 396 aaPredicted RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 EAF1Q96JC9 268 aaPredicted RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 VCX3BQ9H321 246 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 TAF9BQ9HBM6 251 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 LSM2Q9Y333 95 aaKnown RBP12.12□□□□□ -0.47
CHD3-205ENST00000449744 CMYA5Q8N3K9 4069 aa12.12□□□□□ -0.47
CHD3-205ENST00000449744 SLC31A2O15432 143 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 RGS10O43665 173 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 HSMCR30P0CW71 290 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 SLC35A2P78381 396 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 SLC35B1P78383 322 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 EBI3Q14213 229 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 C1orf100Q5SVJ3 147 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 LIPKQ5VXJ0 399 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 SIGIRRQ6IA17 410 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 SLC25A48Q6ZT89 311 aaKnown RBP12.11□□□□□ -0.47
CHD3-205ENST00000449744 LRRTM1Q86UE6 522 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 TGIF2LXQ8IUE1 241 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 FOXRED2Q8IWF2 684 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 CHPT1Q8WUD6 406 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 SGCDQ92629 289 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 ST6GALNAC6Q969X2 333 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 TMEM59Q9BXS4 323 aa12.11□□□□□ -0.47
CHD3-205ENST00000449744 CCDC90BQ9GZT6 254 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms